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Protein Alignment ind and Hoxb8

DIOPT Version :10

Sequence 1:	NP_996087.2	Gene:	ind / 2768974	FlyBaseID:	FBgn0025776	Length:	320	Species:	Drosophila melanogaster
Sequence 2:	NP_034591.1	Gene:	Hoxb8 / 15416	MGIID:	96189	Length:	243	Species:	Mus musculus

Alignment Length:	200	Identity:	62/200 - (31%)
Similarity:	84/200 - (42%)	Gaps:	54/200 - (27%)

- Green bases have known domain annotations that are detailed below.

  Fly   100 SSPGSLYHPYAQLFASKRKSSGFSNYEGCYPSPPLSANPNSQQLPPIHNLYGSP--VVGGLPLPE 162
            ||.||..||              |..:..|..|...:....||.|.....:|.|  ..|..||..
Mouse    43 SSGGSFQHP--------------SQIQEFYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQR 93

  Fly   163 PGSF------------CTSPSASSSASLDYTNNFDEPQGKRFKHESSCSPNSSPLKNHSSGGPVE 215
            ...|            |...:||...        :|.:|      |..||:           |.:
Mouse    94 QSLFGAQDPDLVQYADCKLAAASGLG--------EEAEG------SEQSPS-----------PTQ 133

  Fly   216 ITPLINDYADSSKRI-RTAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQVKIWFQNRR 279
            :.|.:...|.:.:|. |..::..|.||||:||..|.||:|.||||:::.|.|:|:||||||||||
Mouse   134 LFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRR 198

  Fly   280 VKQKK 284
            :|.||
Mouse   199 MKWKK 203

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.