Protein Alignment ind and Hoxa1

DIOPT Version :10

• Sequence 1: NP_996087.2
• Gene: ind / 2768974
• FlyBaseID: FBgn0025776
• Length: 320
• Species: Drosophila melanogaster
• Sequence 2: NP_034579.3
• Gene: Hoxa1 / 15394
• MGIID: 96170
• Length: 336
• Species: Mus musculus
• Alignment Length: 287
• Identity: 82/287 - (28%)
• Similarity: 114/287 - (39%)
• Gaps: 80/287 - (27%)

  Fly    44 PSIPMLPYPASYVGSYLFSLGIQQQQQQQQQQQQHAAAAAAAAAAAAALQQHPH-------VSSS 101
            ||.....:.|.| |.|    |:.|:..........|.|..:...:...:|.|.|       ...|
Mouse    98 PSYGAQNFSAPY-GPY----GLNQEADVSGGYPPCAPAVYSGNLSTPMVQHHHHHQGYAGGTVGS 157

  Fly   102 PGSLYHPYAQLFASKRKSSGFSNYEGCYPSPPLSANPNSQQLPPIHNLYGSPVVGGLPLPEPGSF 166
            |..::|.|.|    ::::...:.|              :..|.|:|..:...
Mouse   158 PQYIHHSYGQ----EQQTLALATY--------------NNSLSPLHASHQEA------------- 191

  Fly   167 CTSPSASSSASLDYTNNFDEPQGKRFKHESSCSPNSSPLKNHSSGGPVEITPLINDYADSSKRIR 231
            |.||::.:|:.   ...||..:.||           :|.|....|.        ..|......:|
Mouse   192 CRSPASETSSP---AQTFDWMKVKR-----------NPPKTGKVGE--------YGYVGQPNAVR 234

  Fly   232 TAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQVKIWFQNRRVKQKK------------ 284
            |.||:.||.|||:||..|.||:|.||:|||..|:|:|.||||||||||:||||
Mouse   235 TNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPA 299

  Fly   285 --GGSESPTFNLSTNSNGSPQA-SPVS 308
              .||:..|...|..|:.||.| ||.|
Mouse   300 TPPGSDEKTEESSEKSSPSPSAPSPAS 326

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ind	NP_996087.2	Homeodomain	228..284	CDD:459649	35/55 (64%)
Hoxa1	NP_034579.3	COG5576	177..>287	CDD:227863	51/158 (32%)
		Homeodomain	234..287	CDD:459649	35/52 (67%)