DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ind and Gsx2

DIOPT Version :9

Sequence 1:NP_996087.2 Gene:ind / 2768974 FlyBaseID:FBgn0025776 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_573555.1 Gene:Gsx2 / 14843 MGIID:95843 Length:305 Species:Mus musculus


Alignment Length:357 Identity:109/357 - (30%)
Similarity:132/357 - (36%) Gaps:166/357 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSRSFLMDSLL---SDRP----------------------------------------------- 15
            |||||.:|||:   |.||                                               
Mouse     1 MSRSFYVDSLIIKDSSRPAPSLPESHPGPDFFIPLGMPSPLVMSVSGPGCPSRKSGAFCVCPLCV 65

  Fly    16 --NLSQKKEKLGSPGGSP-TAAAAVA---AAAMLPSIPML-----PYPASYVGSYLFSLGI---- 65
              :|...:...|:.||:. ||.||||   .|....::|:|     |.|    |...|...:    
Mouse    66 TSHLHSSRPPAGAGGGATGTAGAAVAGGGVAGGTGALPLLKSQFSPAP----GDAQFCPRVSHAH 126

  Fly    66 ------QQQQQQQQQQQQHAAAAAAAAAAAAALQQHPHVSSSPGSLYHPYAQLFASKRKSSGFSN 124
                  |......|.||..:||||||||||||        ::..:|.||.               
Mouse   127 HHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAA--------AAAAALGHPQ--------------- 168

  Fly   125 YEGCYPSPPLSANPNSQQLPPIHNLYGSPVVGGLPLPEPGSFCTSPSASSSASLDYTNNFDEPQG 189
                                     :.:||            |.:.          |.|..:|  
Mouse   169 -------------------------HHAPV------------CAAT----------TYNMSDP-- 184

  Fly   190 KRFKHESSCSPNSSPLKNHSSGGPVEITPLINDYADSSKRIRTAFTSTQLLELEREFSHNAYLSR 254
            :||...|....::|.:.|                   .||:|||||||||||||||||.|.||||
Mouse   185 RRFHCLSMGGSDTSQVPN-------------------GKRMRTAFTSTQLLELEREFSSNMYLSR 230

  Fly   255 LRRIEIANRLRLSEKQVKIWFQNRRVKQKKGG 286
            |||||||..|.||||||||||||||||.||.|
Mouse   231 LRRIEIATYLNLSEKQVKIWFQNRRVKHKKEG 262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
indNP_996087.2 Homeobox 231..283 CDD:278475 46/51 (90%)
Gsx2NP_573555.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 115..151 8/35 (23%)
Homeobox 207..259 CDD:278475 46/51 (90%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 259..305 3/4 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 98 1.000 Domainoid score I7172
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005158
OrthoInspector 1 1.000 - - otm42501
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5146
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.930

Return to query results.
Submit another query.