DRSC/TRiP Functional Genomics Resources

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Protein Alignment ind and Hoxd11

DIOPT Version :10

Sequence 1:NP_996087.2 Gene:ind / 2768974 FlyBaseID:FBgn0025776 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_001414331.1 Gene:Hoxd11 / 102553842 RGDID:7730597 Length:336 Species:Rattus norvegicus


Alignment Length:308 Identity:83/308 - (26%)
Similarity:112/308 - (36%) Gaps:123/308 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 GSPGGSPTAAAAVAAAAMLPSIPMLPYPASYVGSYLFSLGIQQQQQQQQQQQQHAAAAAAAAAAA 89
            |.|||....:...|           ||                          :|||||||||||
  Rat    89 GGPGGGGGGSGGYA-----------PY--------------------------YAAAAAAAAAAA 116

  Fly    90 AA-------------------LQQHPH-VSSSPGSLYHPYAQLFASKRKSS---------GFSNY 125
            ||                   |.:.|. |..:||..:.|.|.  ||...|:         ||..:
  Rat   117 AAEEAAMQRDLLPPAGRRPDVLFKAPEPVCGAPGPPHGPAAA--ASNFYSAVGRNGILPQGFDQF 179

  Fly   126 EGCYPSPPLSANPNSQQLPPIHNLYGSPVVGGLPLPEPGSFCTSPSASSSASLDYTNNFDEPQGK 190
            ....|.||. |.|..|..|       :|     |.||..:....|.|.:...             
  Rat   180 YEAAPGPPF-AGPQPQPAP-------AP-----PQPEGAADKGDPKAGAGGG------------- 218

  Fly   191 RFKHESSCS---PNSSPLKNHSSGGPVE----------------ITPLINDYADSSKRIRTAFTS 236
               ..|.||   |...| |..:.||..|                :.|      ..|::.|..:|.
  Rat   219 ---GGSPCSKATPGPEP-KGAAEGGGGEGEGPPGEAGAEKSGGTVAP------QRSRKKRCPYTK 273

  Fly   237 TQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQVKIWFQNRRVKQKK 284
            .|:.||||||..|.|:::.:|::::..|.|:::||||||||||:|:||
  Rat   274 YQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
indNP_996087.2 Homeodomain 228..284 CDD:459649 25/55 (45%)
Hoxd11NP_001414331.1 None

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