Protein Alignment ind and Hoxa4

DIOPT Version :9

• Sequence 1: NP_996087.2
• Gene: ind / 2768974
• FlyBaseID: FBgn0025776
• Length: 320
• Species: Drosophila melanogaster
• Sequence 2: NP_077326.1
• Gene: Hoxa4 / 100912525
• RGDID: 2814
• Length: 285
• Species: Rattus norvegicus
• Alignment Length: 311
• Identity: 94/311 - (30%)
• Similarity: 117/311 - (37%)
• Gaps: 82/311 - (26%)

  Fly    25 GSPGGSPTAAAAVAAAAMLPSIPMLPYPASYVGSYLFSLGIQQQQQQQQQQQQHAAAAAAAAAAA 89
            |.|||...............|.|.||.|                       ..|||....|..|.
  Rat    27 GGPGGGDGGVGGGPGYPRPQSSPHLPAP-----------------------NPHAARQTPAYYAP 68

  Fly    90 AALQQHPHVSSSPGSLYH------PYAQLFASKRKSSGFSNYEGCYPSPPLSANPNSQQLPPIHN 148
            .|.:...|     |.||.      |||...||..:..         .||...|:|:....||
  Rat    69 RAREPSYH-----GGLYPAPAAACPYACRGASPARPE---------QSPAPGAHPSPAPQPP--- 116

  Fly   149 LYGSPVVGGLPLPEPGSFCTSPSASSSASLDYTNNFDEPQGK--------RFKHESSCSPNSSPL 205
               :|.....|.|...:..|..||.:...|........|:||        :..|.|:.:|
  Rat   117 ---APPRRCAPGPTTPAVATGGSAPACPLLLADQGPAGPKGKEPVVYPWMKKIHVSAVNP----- 173

  Fly   206 KNHSSGGPVEITPLINDYADSSKRIRTAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQ 270
             :::.|.|              ||.|||:|..|:||||:||..|.||:|.||||||:.|.|||:|
  Rat   174 -SYNGGEP--------------KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQ 223

  Fly   271 VKIWFQNRRVKQKKGGSESPTFNLSTNSNGSPQASP-----VSPQVKVHEL 316
            |||||||||:|.||......|...|:|...:|...|     .||....|.|
  Rat   224 VKIWFQNRRMKWKKDHKLPNTKMRSSNPASAPAGPPGKAQTHSPHPHPHPL 274

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ind	NP_996087.2	Homeobox	231..283	CDD:278475	36/51 (71%)
Hoxa4	NP_077326.1	Homeobox	183..236	CDD:278475	36/52 (69%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	1	1.000