Protein Alignment ind and hoxc13

DIOPT Version :10

• Sequence 1: NP_996087.2
• Gene: ind / 2768974
• FlyBaseID: FBgn0025776
• Length: 320
• Species: Drosophila melanogaster
• Sequence 2: XP_002936691.1
• Gene: hoxc13 / 100487255
• XenbaseID: XB-GENE-478832
• Length: 306
• Species: Xenopus tropicalis
• Alignment Length: 317
• Identity: 78/317 - (24%)
• Similarity: 122/317 - (38%)
• Gaps: 85/317 - (26%)

  Fly     3 RSFLMDSLLSDRPNLSQKKEKLGSPGG-------SPTAAAAVAAAAMLPSIPM---LPYPASYVG 57
            |.|:      ..|.|.:....:||..|       ||.||....|.....:..:   .|:.:||.|
 Frog    47 RDFI------SHPALGRHSSAIGSHQGPVYTDITSPEAARQCTAPPSSSNASLGYAYPFGSSYYG 105

  Fly    58 SYLFSLGIQQQQQQQQQQQQHAAAAAAAAAAAAALQQHPHVSSSPGSLYHPY-----------AQ 111
            ..|              .|.|          ...|.|.|       ..|||.           ::
 Frog   106 CRL--------------SQSH----------NVNLHQKP-------CSYHPAEKYPEPSNPLPSE 139

  Fly   112 LFASKRKSSGFSNYEGCYPSPPLSANPNSQQLPPIHNLYGSPVVGGLPLPEPGSFCTSPSASSSA 176
            .|:|:.|...|      |||...|    .|.:|...::...|.:...|         .|...:..
 Frog   140 EFSSRAKEFAF------YPSFASS----YQAVPGYLDMSVVPGISSHP---------EPRHDTLL 185

  Fly   177 SLDYTNNFDEPQGKRFKHESSCSPNSSPLKNHSSGGP----VEITPLINDYADSSKRIRTAFTST 237
            |::...::..|.|  :..:..||.:.|. ..|....|    |.:.|.:::|....|: |..:|..
 Frog   186 SMEGYQHWALPNG--WDGQVYCSKDQSQ-SGHLWKAPFPDVVPLQPEVSNYRRGRKK-RVPYTKI 246

  Fly   238 QLLELEREFSHNAYLSRLRRIEIANRLRLSEKQVKIWFQNRRVKQKKGGSESPTFNL 294
            ||.|||:|::.:.::::.:|..|:....|||:||.|||||||||:||..::..|.:|
 Frog   247 QLKELEKEYAASKFITKEKRRRISTATSLSERQVTIWFQNRRVKEKKVVTKCKTAHL 303

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ind	NP_996087.2	Homeodomain	228..284	CDD:459649	25/55 (45%)
hoxc13	XP_002936691.1	HoxA13_N	31..144	CDD:463521	26/133 (20%)
		Homeodomain	237..293	CDD:459649	25/56 (45%)