DRSC/TRiP Functional Genomics Resources

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Protein Alignment ind and hmx2

DIOPT Version :10

Sequence 1:NP_996087.2 Gene:ind / 2768974 FlyBaseID:FBgn0025776 Length:320 Species:Drosophila melanogaster
Sequence 2:XP_002937849.1 Gene:hmx2 / 100486800 XenbaseID:XB-GENE-480085 Length:252 Species:Xenopus tropicalis


Alignment Length:176 Identity:52/176 - (29%)
Similarity:66/176 - (37%) Gaps:71/176 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 GC-YPSP-----------PLSAN--PNSQQLPPIHNLYGSPVVGGLPLPEPGSFCTSPSASSSAS 177
            || .|.|           |..|:  ||..|:|                        |||..    
 Frog    64 GCNCPDPGDKDSKGQAPHPCGAHRCPNRTQMP------------------------SPSQQ---- 100

  Fly   178 LDYTNNFDE--PQ--GKRFKHESSCSPNSSPLKNHSSGGPVEITPLINDYADSSKRIRTAFTSTQ 238
             |||...|.  ||  |.|                |..||        :...:|.|:.||.|:.:|
 Frog   101 -DYTEEKDSHYPQSLGDR----------------HKDGG--------DKMGNSKKKTRTVFSRSQ 140

  Fly   239 LLELEREFSHNAYLSRLRRIEIANRLRLSEKQVKIWFQNRRVKQKK 284
            :.:||..|....|||...|..:|:.|:|:|.|||.||||||.|.|:
 Frog   141 VYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKR 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
indNP_996087.2 Homeodomain 228..284 CDD:459649 26/55 (47%)
hmx2XP_002937849.1 Homeodomain 130..186 CDD:459649 26/55 (47%)

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