DRSC/TRiP Functional Genomics Resources

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Protein Alignment ind and hoxc4

DIOPT Version :9

Sequence 1:NP_996087.2 Gene:ind / 2768974 FlyBaseID:FBgn0025776 Length:320 Species:Drosophila melanogaster
Sequence 2:XP_002936684.1 Gene:hoxc4 / 100486039 XenbaseID:XB-GENE-967141 Length:297 Species:Xenopus tropicalis


Alignment Length:226 Identity:79/226 - (34%)
Similarity:105/226 - (46%) Gaps:59/226 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 FASKRKSSGFSNYEGCYPSPPLSANPNSQ------QLP--PI------------HNLYGSPVVGG 157
            :.|:.:...|.:::..|  ||.:|.|..|      |.|  |.            |||.|...:..
 Frog    69 YYSRSRDPAFQHHQDLY--PPRTAYPERQFSCASIQAPGNPATHPRLHGQPQSNHNLVGKSQLCE 131

  Fly   158 LPLPE--PGSFCTSPSASSSA------SLDYTNNFDE-----PQGKRFKHESSCSPNSSPLKNHS 209
            .|.|.  ..|..:|||.:.:|      |...||...:     |..|:. |.||.:|      |::
 Frog   132 HPTPSLASNSSSSSPSPAPTACTQAPTSEHPTNTASKQPIVYPWMKKI-HVSSVNP------NYT 189

  Fly   210 SGGPVEITPLINDYADSSKRIRTAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQVKIW 274
            .|.|              ||.|||:|..|:||||:||.:|.||:|.||||||:.|.|||:|:|||
 Frog   190 GGEP--------------KRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIW 240

  Fly   275 FQNRRVKQKKGGSESPTFNLSTNSNGSPQAS 305
            |||||:|.||   :....|....||.|..||
 Frog   241 FQNRRMKWKK---DHRLPNTKVRSNASSNAS 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
indNP_996087.2 Homeobox 231..283 CDD:278475 35/51 (69%)
hoxc4XP_002936684.1 Homeobox 196..250 CDD:365835 35/53 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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