DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ind and hoxd8

DIOPT Version :10

Sequence 1:NP_996087.2 Gene:ind / 2768974 FlyBaseID:FBgn0025776 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_001135589.1 Gene:hoxd8 / 100216142 XenbaseID:XB-GENE-920113 Length:231 Species:Xenopus tropicalis


Alignment Length:250 Identity:72/250 - (28%)
Similarity:100/250 - (40%) Gaps:69/250 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 HPHVSSSPGSLYH--PYAQLFASKR-----KSSGFSNYEGCYPSPPLSANPNSQQLPPIHNLYGS 152
            :|....:..|.::  ||.|...|.|     ..||....:..|..|....:|..|..|.....:|.
 Frog    10 YPKYKDAINSAFYECPYGQEVGSGRAPLVYSGSGSGAPQDYYHHPGTLPSPGYQPAPCGITCHGD 74

  Fly   153 P--VVG---------------GLPLPEPGSFCTSPSASSSASLDYTNNFDEPQGKRFKHESSCSP 200
            |  :.|               ..|:..|.  |.|||||..|..::.            |::|.:.
 Frog    75 PAKLYGYDHFQRQHIFTTHQEAEPVQYPD--CKSPSASIGADPEHL------------HQNSPAS 125

  Fly   201 NSSPLKNHSSGGPVEITPLINDYADSSKRIRTAFTSTQLLELEREFSHNAYLSRLRRIEIANRLR 265
            :..|...      .::.|       ..:|.|..::..|.||||:||..|.||:|.||||:::.|.
 Frog   126 HMFPWMR------AQVAP-------GRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALG 177

  Fly   266 LSEKQVKIWFQNRRVKQKKGGSESPTFNLSTNSNGSPQASPVSPQVKVHELKVEA 320
            |:|:||||||||||:|.||              ..|....|||.|    |.|.||
 Frog   178 LTERQVKIWFQNRRMKWKK--------------ENSKDKFPVSSQ----EGKEEA 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
indNP_996087.2 Homeodomain 228..284 CDD:459649 31/55 (56%)
hoxd8NP_001135589.1 Homeodomain 140..196 CDD:459649 31/55 (56%)

Return to query results.
Submit another query.