DRSC/TRiP Functional Genomics Resources

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Protein Alignment ind and hoxd3

DIOPT Version :10

Sequence 1:NP_996087.2 Gene:ind / 2768974 FlyBaseID:FBgn0025776 Length:320 Species:Drosophila melanogaster
Sequence 2:XP_002935734.1 Gene:hoxd3 / 100038058 XenbaseID:XB-GENE-478462 Length:415 Species:Xenopus tropicalis


Alignment Length:275 Identity:88/275 - (32%)
Similarity:118/275 - (42%) Gaps:74/275 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 PASYVGSYLFSLGIQQQQQQQQQQQQHAAAAAAAAAAAAALQQHPHVSSSPGSLYHPYAQLFASK 116
            |.||      |.|..|||..|........:.|.:...||                     :.|..
 Frog    37 PESY------SYGPSQQQYPQSSLDSDYPSTACSIQPAA---------------------IRAPN 74

  Fly   117 RKSSGFSNYEGCYPSPPLSANPNSQQLPPIHN-LYGSPVVGGLPLPEPG---------SFCTSPS 171
            .|::..|.  .|..:   :::.||.|.|.|.| .:.:|   .||...|.         |..::.|
 Frog    75 HKANDISG--SCMRT---TSSQNSNQAPSISNQQHQAP---SLPPSSPSHGNSSAQKKSKSSNSS 131

  Fly   172 ASSSASLD---YTNNFDEPQGKRFKHESSCS--PNSSPLKNHSSGGPVEITPLINDYADSSKRIR 231
            .||.|:|.   :....:..|..:.|:.||.|  |.....:..|..||            ||||:|
 Frog   132 GSSQATLSKQIFPWMKESRQNAKQKNTSSSSSTPPGENCEEKSPTGP------------SSKRVR 184

  Fly   232 TAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQVKIWFQNRRVKQK-----KGGSESPT 291
            ||:||.||:|||:||..|.||.|.||:|:||.|.|:|:|:||||||||:|.|     ||...|| 
 Frog   185 TAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGIMHSP- 248

  Fly   292 FNLSTNSNGSPQASP 306
                  :..||..||
 Frog   249 ------AGQSPDRSP 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
indNP_996087.2 Homeodomain 228..284 CDD:459649 37/60 (62%)
hoxd3XP_002935734.1 Homeodomain 181..237 CDD:459649 36/55 (65%)
DUF4074 352..413 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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