DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG33288 and RCC1L

DIOPT Version :10

Sequence 1:NP_996136.2 Gene:CG33288 / 2768968 FlyBaseID:FBgn0053288 Length:1115 Species:Drosophila melanogaster
Sequence 2:NP_110425.2 Gene:RCC1L / 81554 HGNCID:14948 Length:464 Species:Homo sapiens


Alignment Length:269 Identity:59/269 - (21%)
Similarity:93/269 - (34%) Gaps:72/269 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 KSHLAENTQSYFYIKNDPVKRLISGPNQSAVICESGRLFVWGENHYGQLGIGGH---------GG 69
            :||.....|.:    :..|.::..|.:.|..:.:.|.::..|....||.|:|.:         ||
Human   218 ESHRVHRMQDF----DGQVVQVACGQDHSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPTKLGG 278

  Fly    70 ------------------ASGKKGGGSHNGNGDI-----VTKPTCVKALKTLGL----KICDVAF 107
                              |....||....||.:.     ||..|.|...:.|..    |:...|.
Human   279 DLAGVNVIQVATYGDCCLAVSADGGLFGWGNSEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAAC 343

  Fly   108 GNHWAVMLTHSNEIFFTGRNIFPEDTHVAQHFTSAQVDQQPCAIIRKPFRLEEFDDYLSKNEETD 172
            |.....:|.....:|..|..|..:..::.:   ||..:..|..:    |.|.||:..:..:.   
Human   344 GGTGCAVLNGEGHVFVWGYGILGKGPNLVE---SAVPEMIPPTL----FGLTEFNPEIQVSR--- 398

  Fly   173 NFMTVQAGKEHFAVLTTTGRLIGCGSNAQ--LQLGELEADY-------DGHPVEIRLDAPVQQFT 228
                ::.|..|||.||..|.|...|.|.:  |.:|.||..|       .|.||::         .
Human   399 ----IRCGLSHFAALTNKGELFVWGKNIRGCLGIGRLEDQYFPWRVTMPGEPVDV---------A 450

  Fly   229 CGPESTLVL 237
            ||.:..:.|
Human   451 CGVDHMVTL 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG33288NP_996136.2 ATS1 <30..244 CDD:444065 56/253 (22%)
RCC1LNP_110425.2 ATS1 <55..274 CDD:444065 12/59 (20%)
RCC1 1. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 58..124
RCC1 2. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 128..191
ATS1 178..>455 CDD:444065 58/263 (22%)
RCC1 3. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 193..247 6/32 (19%)
RCC1 4. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 248..300 9/51 (18%)
RCC1 5. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 302..353 13/50 (26%)
RCC1 6. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 354..411 15/70 (21%)
RCC1 7. /evidence=ECO:0000255, ECO:0000305|PubMed:28608466 412..461 15/57 (26%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.