DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG33288 and herc1

DIOPT Version :9

Sequence 1:NP_996136.2 Gene:CG33288 / 2768968 FlyBaseID:FBgn0053288 Length:1115 Species:Drosophila melanogaster
Sequence 2:XP_009301513.1 Gene:herc1 / 336598 ZFINID:ZDB-GENE-030131-8542 Length:4867 Species:Danio rerio


Alignment Length:1294 Identity:260/1294 - (20%)
Similarity:416/1294 - (32%) Gaps:442/1294 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ASGAIFTLGK------SHLAENTQSYFYIKNDPVKRLISGPNQ-------------SAVICESGR 50
            :.|.:|:.|.      .|...:||.|        .:||.||.|             ||.:.|.|.
Zfish   470 SEGEVFSWGDGDYGKLGHGNSSTQKY--------PKLIQGPLQGKVVVCVSAGYRHSAAVSEDGE 526

  Fly    51 LFVWGENHYGQLGIG------------------------GHGGASGKKG------GGSHN---GN 82
            |:.|||..:|:||.|                        .|..|..|.|      ||..|   |:
Zfish   527 LYTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGH 591

  Fly    83 GDI--VTKPTCVKALKTLGLKICDVAFGNHWAVMLTHSNEIFFTGRNIFPEDTHVAQHFTSAQVD 145
            ||.  |.||..|:||:  |:.|..|..|:..::.||.:.:::..|                    
Zfish   592 GDTNRVYKPKVVEALQ--GMFIRKVCAGSQSSLALTSTGQVYAWG-------------------- 634

  Fly   146 QQPC----------AIIRKPFRLEEFDDYLSKNEETDNFMTVQAGKEHFAVLTTTGRLIGCGSNA 200
               |          |...:|..:||.        .|...:.:..|..|...|:....:...|:|:
Zfish   635 ---CGACLGCGSSEATALRPKLIEEL--------ATTRVVDISIGDSHCLALSHDNEVYAWGNNS 688

  Fly   201 QLQLGELEADYDGH---PVE-----IRLD-APVQQFTCGPESTLVLTATGNLFLTGHLNEFVFPR 256
            ..|.|:      |:   |:.     |.|| ..:||.:.|...:|..||                 
Zfish   689 MGQCGQ------GNSTGPITKPKKVIGLDGVAIQQISAGTSHSLAWTA----------------- 730

  Fly   257 FTELQKNLPPTEAIIFMHISKTSEVYIVTNAGSIYRSFESLRNKSLVFQRFYDYDCEENGPI--- 318
                   ||....::..|     ..|.|....|   :|..||:   ..:|:.|....|..|:   
Zfish   731 -------LPRDRQVVAWH-----RPYCVDLEES---TFSHLRS---FLERYCDGINNEIPPLPFP 777

  Fly   319 --------WKL-LKGFSFYAVLSKANKFFTTFSESGHHLKTFREISKFKNL--RLLDIAVGDQHV 372
                    .|| |:..|.:..|:.|....|:.        ..|:....:||  ||:|.:|.|:  
Zfish   778 SSKEHHNFLKLCLRLLSNHLALALAGGVATSI--------LGRQARPLRNLLFRLMDASVPDE-- 832

  Fly   373 LVQGIPRSSMSSASVNGSAEPNRYVNRSFVLQPTDANGNKEDTRTHSGRSLIKQ---------EG 428
                |..:.:.:.||..          :.:|.|.     :|  |.....||:.|         :|
Zfish   833 ----IQEAVIETLSVGA----------TMLLPPL-----RE--RMELLHSLLPQGPDRWESLSKG 876

  Fly   429 MEETEDLSMSTTVGELAAAAGAGTAAAMEAVKHLINGEKPEEKSDLTR----YQDLNANIESADI 489
            .....|:.:::.......|:..|.:...:|      .|.|.:.||.|.    :.|.:.:...|:|
Zfish   877 QRMQLDIILTSLQDHTHVASLLGYSCPPDA------SEPPAQPSDSTHVPGTHSDTHPDTHLAEI 935

  Fly   490 IPKE-------------HKEAKGSDEIGPNSNISEKEEDNQI----------------ADRVTPG 525
            :.|.             .:..|.||:|...::.|:..:...:                .:.||.|
Zfish   936 LMKTLLRNLGFYTDQAFGELEKNSDKILQGTSSSDSSQPAHLHELLCSLQKQLLAYCHINSVTEG 1000

  Fly   526 NKNESAADQEKSVHSP------NTAATSEAIKTNDGYKEMKPSATIESPVITADTKESSLKPIVS 584
            :.:.:...:...:..|      |.:||  .::.:.|...::...   ..||......|.|..||:
Zfish  1001 SSSVALLHKHLQLLLPHATDIFNRSAT--LLRESSGNGSVREKL---RDVIYMSAAGSMLCQIVT 1060

  Fly   585 -----PVKTKRSPAKTIESSIKSSSSPVKPTESMQKLPTPPTHTPTPPNSPTESLRSNKSAH-DM 643
                 ||...| |..:....:      :.|.:.:.||        .|..:|.|........| ..
Zfish  1061 SLLLLPVWVAR-PLLSFLLDL------LPPLDRLNKL--------LPAATPLEEQELQWPLHGSP 1110

  Fly   644 ELVDPKPKVPGSQET---------------------LLRPRTPYPESSNSSTPQTIKKTPIRNFS 687
            :|||| ..|.|..::                     :|:...|..|..:::   ...|||:  ||
Zfish  1111 DLVDP-VCVSGPAQSWVWLVDLERTAALLVGRCLGGMLQGAAPSAEEQHTT---HWLKTPL--FS 1169

  Fly   688 YESAMDHDHLERTSPELVSSLDTVEEVPTAKIHVNTPTP-PTEDDEHLAVEIT--TTKDSTDSSK 749
                   :.||...|:|.:.:.::.||.........|.. ....|..:.|::.  :||:.|.|..
Zfish  1170 -------NGLETEIPQLDACISSLLEVALCGNEEQRPFDCQLRADMSVLVDLALGSTKEPTHSLW 1227

  Fly   750 VINEIRFINDGVDVTSRVEEQMPDTPLESSVEDL--------ESDGEQKMQRGEEQVDKIVTSSE 806
            ...:...|:...|..|...|.:.||.....:..|        ::.||     |..|..|::....
Zfish  1228 SNMQDYAISKDWDSASLPNEALLDTVSRFVLAVLLKHTGLLGQACGE-----GRYQPCKLLAEVY 1287

  Fly   807 EAVSKVGEDAIDVMDSTRNSIQTAVKNAANGARDAMEAVGERMATGARGAVDTVGGAVGAAGKGA 871
            .:|.||           ||.: .|.||        ||.:..|.::..|...|.|           
Zfish  1288 RSVYKV-----------RNRL-LACKN--------MELIQTRSSSRERRISDNV----------- 1321

  Fly   872 HRLASDAMHAVEQVGSSAMHAVEQAGSNAVKAASETKDSMGRAMDSVTSKISTEVLGAKENISSL 936
                 |::....|..|......|:|.........|.::......|....: ..||:.|    ..:
Zfish  1322 -----DSVEMDPQEHSFTRTIDEEAELEERDREREREEGHQEQEDEEEER-EHEVMTA----GKI 1376

  Fly   937 FQ-IKAAREADPQTTPCSTPRGED-----DLSFKEGAPKTTTTLGSNEEDERTTASVNSNHNSAG 995
            || ..:||||         .||.|     .:|.:|..|:        ...||..:|...      
Zfish  1377 FQCFLSAREA---------ARGRDRDRTGSMSVQEEPPQ--------PGPERRNSSTPQ------ 1418

  Fly   996 HGNGNGNIFEPSTTFEDPLDAVVERSKKAMQDDIRAMQLRANS-----HI--QAVAQQKEEDAKG 1053
                     |....:....:||:.|.         ||.|.|.|     ||  |.:.....:|..|
Zfish  1419 ---------EGQDLYTTSCNAVIHRC---------AMLLLALSTPLAQHINQQPLTGGVNQDGVG 1465

  Fly  1054 FV----------KQVMDRLSCRNEKAVRIEDELRPPAG-----SHNKNTNKVNSELSLT 1097
            |:          :.:....|||..|: |.|.:|..|..     |.|...| |:.:|:.|
Zfish  1466 FMTRSESLSAESRSIHSSPSCRLTKS-RSESDLSQPESDEEGYSLNARRN-VDLDLAFT 1522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG33288NP_996136.2 ATS1 5..>260 CDD:227511 71/327 (22%)
herc1XP_009301513.1 RCC1 369..726 CDD:332518 68/302 (23%)
SPRY_HERC1 2004..2161 CDD:293939
UBA_HERC1 2729..2772 CDD:270584
WD40 3406..3773 CDD:330360
WD40 repeat 3419..3452 CDD:293791
WD40 repeat 3479..3514 CDD:293791
WD40 repeat 3527..3569 CDD:293791
WD40 repeat 3575..3611 CDD:293791
WD40 repeat 3618..3660 CDD:293791
WD40 repeat 3665..3710 CDD:293791
WD40 3737..>3831 CDD:330360
WD40 repeat 3749..3784 CDD:293791
RCC1 4004..4351 CDD:332518
HECTc 4479..4847 CDD:238033
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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