DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG33288 and HERC2

DIOPT Version :9

Sequence 1:NP_996136.2 Gene:CG33288 / 2768968 FlyBaseID:FBgn0053288 Length:1115 Species:Drosophila melanogaster
Sequence 2:NP_608388.2 Gene:HERC2 / 33035 FlyBaseID:FBgn0031107 Length:4912 Species:Drosophila melanogaster


Alignment Length:886 Identity:175/886 - (19%)
Similarity:278/886 - (31%) Gaps:312/886 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SGAIFTLGKSHLAENTQSYFYIKND----------------------------PVKR-------- 34
            |..|..|...|:|..::|.|.:..|                            ||.|        
  Fly  3013 SQTISRLRPIHIAGGSKSLFIVSQDGKVYACGEGTNGRLGLGVTHNVPLPHQLPVLRQYVVKKVA 3077

  Fly    35 LISGPNQSAVICESGRLFVWGENHYGQLGIGGHGGASGKKGGGSHNGNGDIVTKPTCVKALKTLG 99
            :.||...:..:...|::|.|||...|:||                :||...:.||..|:||:  .
  Fly  3078 VHSGGKHALALTLDGKVFSWGEGEDGKLG----------------HGNRTTLDKPRLVEALR--A 3124

  Fly   100 LKICDVAFGNHWAVMLTHSNEIFFTGRNIFPEDTH----------VAQHFTSAQVDQQPCAIIRK 154
            .||.|||.|:..:..::...|::..|...:....|          :.......:|.|..|.    
  Fly  3125 KKIRDVACGSSHSAAISSQGELYTWGLGEYGRLGHGDNTTQLKPKLVTALAGRRVVQVACG---- 3185

  Fly   155 PFRLEEFDDYLSKNEETDNFMTVQAGKEHFAVLTTTGRLI--GCGSNAQLQLGELEADYDGHPVE 217
                       |::.:|             ..||..|.:.  |.|...:|..|..|.....|.:|
  Fly  3186 -----------SRDAQT-------------LALTEDGAVFSWGDGDFGKLGRGGSEGSDTPHEIE 3226

  Fly   218 IRLDAPVQQFTCGPESTLVLTATGNL--------FLTGHLNEFVFPRFTELQKNLPPTEAIIFMH 274
            ......|.|..||.:.:|.||..|.:        :..||..:                     .|
  Fly  3227 RLSGIGVVQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGD---------------------QH 3270

  Fly   275 ISKTSEV------------------YIVTNAGSIYRSFESLRNKSLVFQRFYDYDCEENGPIWKL 321
            :.|...:                  ..||:||.:|              .:.|.|..:.|     
  Fly  3271 VRKPQPIGGLRGRRVIHVAVGALHCLAVTDAGQVY--------------AWGDNDHGQQG----- 3316

  Fly   322 LKGFSFYAVLSKANKFFTTFSESGHHLKTFREISKFKNLRL-LD------IAVGDQHVLVQGIPR 379
                                  ||:   ||  ::|...|.: ||      :|.|..|.:..|:|.
  Fly  3317 ----------------------SGN---TF--VNKKPALVIGLDAVFVNRVACGSSHSIAWGLPN 3354

  Fly   380 SSMSSASVNGSAEPNRYVNRSFVLQPTDANGNKEDTRTHSGRSLIKQEGM----EETEDLSMSTT 440
            :|        |.|..|        .|...:..: |....|...:.:.|.|    :|.:.|:.|:.
  Fly  3355 AS--------SDEEKR--------GPVPFSSTR-DPLGGSSLGIYEAETMQTLKQEAKPLNQSSL 3402

  Fly   441 VGELAAAAGAGTAAAMEAVKHLINGEKPEEKSDLTRYQDLNANIESADIIPKEHKEAKGSDEIGP 505
            ...||....|...||:        |......|.|...|.:.|.:.|...:..:.:.|.|.     
  Fly  3403 SESLALETPAARQAAL--------GHVLRAMSILQARQLIVAALTSHSKVNFKERGAVGG----- 3454

  Fly   506 NSNISEKEEDN-----------QIADRVTPGNKNESAADQEKSVHSPNTAATSEAIKTNDGYKEM 559
                   |||:           |:|:.:..|. .|:.||                 .|:.|.:|.
  Fly  3455 -------EEDHLIGGPIMGAPLQLAETIAQGG-GEAPAD-----------------ATDAGLQEH 3494

  Fly   560 KPSATIESPVITADTKESSLKPI-VSPVKTKRSPAKTIESSIKSSSSPVKPTESMQKLPTPPTHT 623
            .|.|.:::.........::|.|: ..|:...:|...::..|...|||.: |.....::.......
  Fly  3495 SPEAAVDALTGGMSGGANTLPPLSAGPLSAFQSLTGSLSMSGSLSSSAL-PQHKHSRMSASAMSV 3558

  Fly   624 PTPPNSPTESLRSNKS-AHDME-----LVDPKPKVPGSQETLLR----PRTPYPESSNSSTPQTI 678
            .....:..|.:.|:.| .|.::     |.:|:.|   |...||:    .|...|     ||.|||
  Fly  3559 MAATMTQQEEMLSHISHCHGLDDFGGLLGEPEAK---SLVELLKLAVCGRCGPP-----STSQTI 3615

  Fly   679 KKTPIRNFSYESAMDHDHLERTSPELVSSLDTVEEVPTAKIHV--NTPTPPTEDDEHLAVE-ITT 740
            ..|.|...:...|:....||....||       |::.|:: |.  ..|.|..::..|..|: :..
  Fly  3616 ADTLISLGAGTPAVAAMLLETCITEL-------EDLCTSR-HCLGKLPKPVMQESSHPYVDNVNV 3672

  Fly   741 TK--------------DSTDSSKVINEIRFINDGVDVTSRV 767
            |.              ||..|::..|:...|.||   |.||
  Fly  3673 TGVVRIPGAEMLRLEFDSQCSTEKRNDPLVIMDG---TGRV 3710

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG33288NP_996136.2 ATS1 5..>260 CDD:227511 62/309 (20%)
HERC2NP_608388.2 RCC1 638..683 CDD:278826
RCC1 687..737 CDD:278826
RCC1 740..787 CDD:278826
RCC1 790..841 CDD:278826
RCC1_2 828..857 CDD:290274
Cyt-b5 1290..1363 CDD:278597
MIB_HERC2 1928..1987 CDD:284184
UBA_HERC2 2515..2559 CDD:270585
Cul7 2624..2699 CDD:288381
APC10-HERC2 2762..2932 CDD:176485
RCC1 3037..3088 CDD:278826 6/50 (12%)
RCC1 3091..3140 CDD:278826 21/66 (32%)
RCC1 3144..3194 CDD:278826 8/77 (10%)
RCC1 3197..3246 CDD:278826 13/48 (27%)
RCC1 3250..3298 CDD:278826 5/68 (7%)
RCC1 3302..3350 CDD:278826 16/93 (17%)
RCC1_2 4136..4166 CDD:290274
RCC1 4154..4203 CDD:278826
RCC1 4206..4257 CDD:278826
RCC1 4260..4309 CDD:278826
RCC1 4312..4360 CDD:278826
RCC1 4364..4413 CDD:278826
HECTc 4509..4880 CDD:238033
HECTc 4553..4878 CDD:214523
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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