DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pura and Arhgef25

DIOPT Version :9

Sequence 1:NP_996016.2 Gene:Pura / 2768948 FlyBaseID:FBgn0035802 Length:1904 Species:Drosophila melanogaster
Sequence 2:XP_006241516.1 Gene:Arhgef25 / 314904 RGDID:735210 Length:613 Species:Rattus norvegicus


Alignment Length:604 Identity:164/604 - (27%)
Similarity:271/604 - (44%) Gaps:148/604 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1219 GPSSSNCSCWRESRNLEDMDQMEEEEEE--------QDHDCDGGDGEEQQSKIADSGLGVCDNCE 1275
            ||.|:.    .||...|: ||..|.|.|        :.:...|.:|....|.:  |||..     
  Rat    41 GPGSTK----TESECTEE-DQTGEREREVLAWAPQPESYSIAGSEGSMSASAV--SGLAA----- 93

  Fly  1276 RNPKLARICSCQSLNEKSHDELLEDECFDRPS------KRYMDIMHS----PMEANAH----LQC 1326
                    .|..|....||      .|...|.      :|::|  ||    .:|..|.    .||
  Rat    94 --------LSGPSSGLSSH------PCSPVPPGPVTGLRRWLD--HSKHCLSVETEADSGQTRQC 142

  Fly  1327 HGSSL--------ELPKLEELSCL--------DPKIQKTL------------------LLIMREM 1357
            ....|        |||:|..|:.|        .|..::||                  :.::.|:
  Rat   143 ENWMLEPTLTTGQELPELTLLTTLLEGPGVKAQPAEEETLSQAPKNEEEQKKTALERSMFVLSEL 207

  Fly  1358 IGTERDYVRSLYYVIENYIDELLREDIPQPLRGQRNVIFGNIEKIFEFHNSHFLGELERYERNPL 1422
            :.|||.||..|..::|.|:..:..:.:|:.|||:..::||||::|:|:|..:||.||::..::|.
  Rat   208 VETERMYVDDLGQIVEGYMATMATQGVPESLRGRDRIVFGNIQQIYEWHRDYFLQELQQCLKDPD 272

  Fly  1423 KVGAAFLEMESKFYLYALYNKNKPKSDTLLSEYGSSFFKPKQMQLQDKLDLASYLLKPVQRMGKY 1487
            .:...|::.|.:.::|.:|.:|||||:.:|||:|.|:|:..:.||..:|.|:..|:|||||:.||
  Rat   273 WLAQLFIKHERRLHMYVVYCQNKPKSEHVLSEFGDSYFEELRQQLGHRLQLSDLLIKPVQRIMKY 337

  Fly  1488 ALLLQQLVKACKGVEGAALQEIAADVEELQRAEEMVKFQLRHGNDLLAMDSLRDCDVNVKEQGRL 1552
            .|||:..:|        ..:....|.|||::|.|::.|..:..||::::..||..:..:..||:|
  Rat   338 QLLLKDFLK--------YYRRAGMDTEELEQAVEVMCFVPKRCNDMMSLGRLRGFEGKLTAQGKL 394

  Fly  1553 LRQNEFLVWQGRGG-----KKTLRQVFLFEELVLFSKA-------RRFPDHKNLDIYIYKNSIKT 1605
            |.|:.|||.:...|     :...|:|||||::|:||:|       ...|.      |:||||||.
  Rat   395 LGQDTFLVTEPEAGGLLSSRGRERRVFLFEQIVIFSEALGGGGRGGTQPG------YVYKNSIKV 453

  Fly  1606 SDIGLTAHTGDSATKFEIWFRKRKPD---DTWMLQCMSEDIKNAWTEEISKLLWKQAK------- 1660
            |.:||..:...:|.:|.:  ..|.|:   ..::||.....:..||.::::::|..|..       
  Rat   454 SCLGLEGNLQGNACRFAL--TSRGPEGGIQRYVLQASDPAVSQAWIKQVAQILESQRDFLNALQS 516

  Fly  1661 ----RNREVR---LAEMSSMGIGSK----------------PCLDIRPSNNQISDRSIPL--AQL 1700
                :.||.:   |......|:||.                |.|.:.| ..::....:||  ..|
  Rat   517 PIEYQRRESQTNSLGRSGGPGVGSPGRMAQVSMHTPINGSLPSLLLLP-RGEVPRAPLPLDTQAL 580

  Fly  1701 NKTPKLRHSEPGKGSMRRP 1719
            ::||...:..|...::..|
  Rat   581 SETPLTPYDPPALPTVNSP 599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PuraNP_996016.2 PX_domain 15..>52 CDD:295365
RhoGEF 1353..1532 CDD:279015 63/178 (35%)
PH_puratrophin-1 1524..1663 CDD:270062 45/164 (27%)
PH 1562..1655 CDD:278594 30/107 (28%)
Arhgef25XP_006241516.1 RhoGEF 203..374 CDD:279015 63/178 (35%)
PH2_Kalirin_Trio_p63RhoGEF 378..520 CDD:270061 42/149 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0689
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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