DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42458 and NAB3

DIOPT Version :9

Sequence 1:NP_996010.2 Gene:CG42458 / 2768945 FlyBaseID:FBgn0259935 Length:711 Species:Drosophila melanogaster
Sequence 2:NP_015134.1 Gene:NAB3 / 855911 SGDID:S000006111 Length:802 Species:Saccharomyces cerevisiae


Alignment Length:477 Identity:108/477 - (22%)
Similarity:168/477 - (35%) Gaps:118/477 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 SRIFVGNLNTFQCSKTDVERMFQIYGRLAGISMHKGYAFVQFTNPFDARNA--CHGED---GKTV 79
            ||:|:|||.....||.|:.|:|..||.:..|::...:.|:||.||...|:|  |..::   ||.:
Yeast   330 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKL 394

  Fly    80 LSQTLDVNMVAEPKAHQIGRKRQNVSKTGNDWDYFYDSYCSSAL--LRGGGGAGGGGSNGVRAKK 142
            :.:....|  |.|:... |....|.|.|          :.|||.  .:...|......||...||
Yeast   395 ILEVSSSN--ARPQFDH-GDHGTNSSST----------FISSAKRPFQTESGDMYNDDNGAGYKK 446

  Fly   143 RKR-----------------------LMTNGGGLAVAV-----QQQQQQHHHSAAAVAAAAAAAV 179
            .:|                       ...:|.||...:     :.:..:..:.||.........|
Yeast   447 SRRHTVSCNIFVKRTADRTYAIEVFNRFRDGTGLETDMIFLKPRMELGKLINDAAYNGVWGVVLV 511

  Fly   180 HQQQQ-QVQQQQQQQHHQQQQQQHQQQVAAVAMAAMANLLPQQ--------QLLLHQQNLLSNAA 235
            ::... .||...:....:.:..::....|..|:|...|:...:        :.:.||||:.....
Yeast   512 NKTHNVDVQTFYKGSQGETKFDEYISISADDAVAIFNNIKNNRNNSRPTDYRAMSHQQNIYGAPP 576

  Fly   236 V----ATTVTAAPSSIHWSQYK----QEQQHHPHAHH----PHHQQPFGFQ-----------LKS 277
            :    ...|...|.:.::..|.    |:||..|:.::    |.|.|.:|.|           .::
Yeast   577 LPVPNGPAVGPPPQTNYYQGYSMPPPQQQQQQPYGNYGMPPPSHDQGYGSQPPIPMNQSYGRYQT 641

  Fly   278 SV--------------AVQATTSPQNAKSAIIANQTALG--EPYPVGAAAFAAHQQQHQHQQQHQ 326
            |:              ..||...||......:..|..|.  :..|....:......|.|.||.|.
Yeast   642 SIPPPPPQQQIPQGYGRYQAGPPPQPPSQTPMDQQQLLSAIQNLPPNVVSNLLSMAQQQQQQPHA 706

  Fly   327 QPLLQPLTLALSPQQPQPHQ----------AATPLQLHSQLMQQ------------HQHQQQQQQ 369
            |..|..|..::..|.||..|          :::|..:.:....|            ||....|||
Yeast   707 QQQLVGLIQSMQGQAPQQQQQQLGGYSSMNSSSPPPMSTNYNGQNISAKPSAPPMSHQPPPPQQQ 771

  Fly   370 QQQQQQQQHNQQQQHAQEQLSL 391
            ||||||||..|||.......||
Yeast   772 QQQQQQQQQQQQQPAGNNVQSL 793

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42458NP_996010.2 RRM <11..>89 CDD:223796 25/73 (34%)
RRM_hnRNPC_like 20..87 CDD:240787 24/71 (34%)
NAB3NP_015134.1 RRM <295..>439 CDD:223796 35/121 (29%)
RRM_Nab3p 331..401 CDD:240788 23/69 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 44 1.000 Domainoid score I3160
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 90 1.000 Inparanoid score I1544
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000671
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR13968
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R8797
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
77.050

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