DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42458 and ralyl

DIOPT Version :9

Sequence 1:NP_996010.2 Gene:CG42458 / 2768945 FlyBaseID:FBgn0259935 Length:711 Species:Drosophila melanogaster
Sequence 2:XP_012820330.1 Gene:ralyl / 779659 XenbaseID:XB-GENE-5767075 Length:333 Species:Xenopus tropicalis


Alignment Length:281 Identity:73/281 - (25%)
Similarity:123/281 - (43%) Gaps:77/281 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SKLSNQTNSQDPQAVNSRIFVGNLNTFQCSKTDVERMFQIYGRLAGISMHKGYAFVQFTNPFDAR 68
            ::.||.||..||:::|||:|:|||||....|.|:|.:|..||::.|.|:||||||||:.:...||
 Frog     5 TQTSNVTNKNDPKSINSRVFIGNLNTGIVKKADIEAIFAKYGKIVGCSVHKGYAFVQYISERHAR 69

  Fly    69 NACHGEDGKTVLSQTLDVNMVAEPKAH--QIGRKR---QNVSKTGNDWDYFYDSYCSSAL----- 123
            .|..||:.:.:..|.||:||..|||.:  ::|.||   ...|....|:||:.|.:.:...     
 Frog    70 AAVTGENSRIIGGQPLDINMAGEPKPYRPKLGTKRPLSTLYSAYDFDYDYYRDDFYNRLFDYGHG 134

  Fly   124 ------------------------------LRGGGGAGGGGSNGVRAKKRK-----------RLM 147
                                          |:||..:..|||:...:|.:.           ::.
 Frog   135 RVPPPPRAAIPLKRPRMSVPTTRRGKGVFSLKGGSRSASGGSSSSGSKLKSDELQTIKKELTQIK 199

  Fly   148 TNGGGLAVAVQQ-QQQQHHHSAAAV--------AAAAAAAVHQQQQQV----------------- 186
            |....|...::: ::||...:..|:        :....|.|.::.||:                 
 Frog   200 TKIDSLLGRLEKIEKQQKAEAGDALLRLWIMGHSYKKRALVKERGQQMDFSRDSLEIRWLGIKGA 264

  Fly   187 QQQQQQQHHQQQQQQHQQQVA 207
            |::|.:.|....|::.:.:.|
 Frog   265 QKKQTEDHTDSVQEECKSETA 285

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42458NP_996010.2 RRM <11..>89 CDD:223796 37/77 (48%)
RRM_hnRNPC_like 20..87 CDD:240787 32/66 (48%)
ralylXP_012820330.1 RRM_SF 15..97 CDD:418427 40/81 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 74 1.000 Domainoid score I8954
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000671
OrthoInspector 1 1.000 - - otm48616
Panther 1 1.100 - - O PTHR13968
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X853
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.010

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