DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42458 and msi1a

DIOPT Version :9

Sequence 1:NP_996010.2 Gene:CG42458 / 2768945 FlyBaseID:FBgn0259935 Length:711 Species:Drosophila melanogaster
Sequence 2:XP_005171799.1 Gene:msi1a / 503755 ZFINID:ZDB-GENE-050306-36 Length:157 Species:Danio rerio


Alignment Length:156 Identity:34/156 - (21%)
Similarity:63/156 - (40%) Gaps:48/156 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SKLSNQTNSQDPQAVNSRIFVGNLNTFQCSKTDVERMFQIYGRLAGISM--------HKGYAFVQ 60
            |.||:.|  ||......::|:|.| ::|.::..::..|..:|.:....:        .:|:.||.
Zfish     8 SSLSSST--QDSPHDPCKMFIGGL-SWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVT 69

  Fly    61 FTNPFD-----ARNACHGEDGKTVLSQTLDVNMVAEPKAHQ---IGRKRQ------NVSKTGNDW 111
            :.:...     |:|. |..|.||:..:      ||.|:..|   :.|.::      :|:.|..|.
Zfish    70 YVDQTGVDKVLAQNR-HELDSKTIDPK------VAFPRRAQPKLVTRTKKIFVGGLSVNTTIEDV 127

  Fly   112 DYFYD----------------SYCSS 121
            ..::|                |:|||
Zfish   128 KQYFDQFGKVSSRTVLYSLLCSFCSS 153

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42458NP_996010.2 RRM <11..>89 CDD:223796 17/90 (19%)
RRM_hnRNPC_like 20..87 CDD:240787 15/79 (19%)
msi1aXP_005171799.1 RRM <18..154 CDD:223796 28/144 (19%)
RRM1_MSI 24..98 CDD:241020 16/81 (20%)
RRM_SF 108..>144 CDD:302621 5/35 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1315388at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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