DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42458 and srsf5

DIOPT Version :9

Sequence 1:NP_996010.2 Gene:CG42458 / 2768945 FlyBaseID:FBgn0259935 Length:711 Species:Drosophila melanogaster
Sequence 2:NP_001004783.1 Gene:srsf5 / 448003 XenbaseID:XB-GENE-487049 Length:272 Species:Xenopus tropicalis


Alignment Length:88 Identity:31/88 - (35%)
Similarity:49/88 - (55%) Gaps:8/88 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 RIFVGNLNTFQCSKTDVERMFQIYGRLAGISMHKGYAFVQFTNPFDARNACHGEDGKTVLSQTLD 85
            |:|:|.||.....| ||||.|:.|||:..|.:.:|:.||:|.:|.||.:|.:..|||.:.::.:.
 Frog     5 RVFIGRLNPAAREK-DVERFFKGYGRIRDIDLKRGFGFVEFDDPRDADDAVYELDGKELCNERVT 68

  Fly    86 VNMV-----AEPKAHQIGRKRQN 103
            :...     ..|:.  :||.|.|
 Frog    69 IEHARLRSRGGPRG--LGRGRYN 89

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42458NP_996010.2 RRM <11..>89 CDD:223796 26/67 (39%)
RRM_hnRNPC_like 20..87 CDD:240787 26/65 (40%)
srsf5NP_001004783.1 RRM1_SRSF4_like 5..73 CDD:240783 26/68 (38%)
RRM2_SRSF4_like 110..180 CDD:241044
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1315388at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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