DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42458 and raly

DIOPT Version :9

Sequence 1:NP_996010.2 Gene:CG42458 / 2768945 FlyBaseID:FBgn0259935 Length:711 Species:Drosophila melanogaster
Sequence 2:NP_991173.1 Gene:raly / 402903 ZFINID:ZDB-GENE-041010-127 Length:273 Species:Danio rerio


Alignment Length:118 Identity:59/118 - (50%)
Similarity:78/118 - (66%) Gaps:8/118 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SNQTNSQDPQAVNSRIFVGNLNTFQCSKTDVERMFQIYGRLAGISMHKGYAFVQFTNPFDARNAC 71
            ||.||..||:::|||:|:|||||....|:|||.:|..|||:.|.|:||||||||:.|...||.|.
Zfish     8 SNITNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVLGCSVHKGYAFVQYANERHARGAV 72

  Fly    72 HGEDGKTVLSQTLDVNMVAEPKAHQ-IGRKRQNVS-KTGNDWDY------FYD 116
            .||:|:.:..||||:||..|||.:: .|.||...: .:|.|:||      |||
Zfish    73 IGENGRVLAGQTLDINMAGEPKPNRPKGLKRSAATLYSGYDFDYDYYRDDFYD 125

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42458NP_996010.2 RRM <11..>89 CDD:223796 42/77 (55%)
RRM_hnRNPC_like 20..87 CDD:240787 37/66 (56%)
ralyNP_991173.1 RRM_RALY 20..95 CDD:241048 42/74 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 75 1.000 Domainoid score I9007
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000671
OrthoInspector 1 1.000 - - otm24277
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13968
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X853
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
76.970

Return to query results.
Submit another query.