DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42458 and Raly

DIOPT Version :10

Sequence 1:NP_996010.2 Gene:CG42458 / 2768945 FlyBaseID:FBgn0259935 Length:711 Species:Drosophila melanogaster
Sequence 2:XP_008760536.1 Gene:Raly / 296301 RGDID:1307228 Length:311 Species:Rattus norvegicus


Alignment Length:311 Identity:84/311 - (27%)
Similarity:118/311 - (37%) Gaps:122/311 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SNQTNSQDPQAVNSRIFVGNLNTFQCSKTDVERMFQIYGRLAGISMHKGYAFVQFTNPFDARNAC 71
            ||.||..||:::|||:|:|||||....|:|||.:|..|||:||.|:||||||||:.|...||.|.
  Rat     8 SNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERHARAAV 72

  Fly    72 HGEDGKTVLSQTLDVNMVAEPKAHQ-IGRKRQNV---SKTGNDWDYFYDSYCS------------ 120
            .||:|:.:..||||:||..|||.:: .|.||...   |....|:||:.|.||:            
  Rat    73 LGENGRVLAGQTLDINMAGEPKPNRPKGLKRAATAIYSGYSFDYDYYQDYYCARLFDYRGRLSPV 137

  Fly   121 ----------------------------------------------------------------S 121
                                                                            .
  Rat   138 PVPRAVPVKRPRVTVPLVRRVKTTIPVKLFARSTAISTGSAKIKLKSSELQTIKTELTQIKSNID 202

  Fly   122 ALL-----------------------RGGGG---AGGGGSNGVRAKKRKRLMTNGGGLAVAVQQQ 160
            |||                       .||||   :|||||..|.:..     :.|.|.:.:....
  Rat   203 ALLGRLEQIAEEQKANPDGKKKGDSSSGGGGGSSSGGGGSGNVGSGG-----SGGSGSSSSRPPA 262

  Fly   161 QQQHHHSAAAVAAAAAAAVHQQQQQVQQQQQQQ---HHQQQQQQHQQQVAA 208
            .|:.        .|:.|...|.:.|.:....::   .|.:::.:|.|...|
  Rat   263 PQED--------TASEAGTPQGEVQTRDDGDEEGLLTHSEEELEHSQDTDA 305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42458NP_996010.2 RRM_hnRNPC_like 20..87 CDD:409778 38/66 (58%)
RalyXP_008760536.1 RRM_RALY 20..95 CDD:410016 43/74 (58%)

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