DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42458 and ztf-4

DIOPT Version :9

Sequence 1:NP_996010.2 Gene:CG42458 / 2768945 FlyBaseID:FBgn0259935 Length:711 Species:Drosophila melanogaster
Sequence 2:NP_491976.2 Gene:ztf-4 / 172422 WormBaseID:WBGene00020399 Length:367 Species:Caenorhabditis elegans


Alignment Length:565 Identity:87/565 - (15%)
Similarity:160/565 - (28%) Gaps:270/565 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SKLSNQTNSQDPQAVNSRIFVGNLNTFQCSKTDVERMFQIYGRLAGIS--MHKGYAFVQFTNPFD 66
            |.:|..|:|:||..:.:|:|:||:.....::.|:..:|:.:|::..::  ..:|:.||||.....
 Worm    67 SDISYDTSSKDPHMIRARVFIGNIARAIITRDDIIELFRPFGKIIAVNYFAQQGFGFVQFNEAGS 131

  Fly    67 ARNACHGEDGKTVLSQTLDVNMVAEPKAHQIGRKRQNVSKTGNDWDYFYDSYCSSALLRGGGGAG 131
            |..:|...:|.:..:..|||::.      .:|..|:   .|||:                     
 Worm   132 ADESCRSLNGMSWKACCLDVHLA------MLGSLRK---PTGNE--------------------- 166

  Fly   132 GGGSNGVRAKKRKRLMTNGGGLAVAVQQQQQQHHHSAAAVAAAAAAAVHQQQQQVQQQQQQQHHQ 196
              |..|                                                           
 Worm   167 --GRQG----------------------------------------------------------- 170

  Fly   197 QQQQQHQQQVAAVAMAAMANLLPQQQLLLHQQNLLSNAAVATTVTAAPSSIHWSQYKQEQQHHPH 261
                                                     .|:..||..:.    |...||   
 Worm   171 -----------------------------------------NTIAPAPLPVG----KPLTQH--- 187

  Fly   262 AHHPHHQQPFGFQLKSSVAVQATTSPQNAKSAIIANQTALGEPYPVGAAAFAAHQQQHQHQQQHQ 326
                              ||.  ||.|:||           .||                     
 Worm   188 ------------------AVD--TSAQSAK-----------RPY--------------------- 200

  Fly   327 QPLLQPLTLALSPQQPQPHQAATPLQLHSQLMQQHQHQQQQQQQQQQQQQQHNQQQQHAQEQLSL 391
                                                     :.::.:..:|:.:.:|.|....::
 Worm   201 -----------------------------------------EDEEYEIFKQNKRNKQFANGDTTI 224

  Fly   392 HQQWGPFKVYSNPDTLICGNCRESFGELSELLDHKKSYCKLRFTCKCQDVAFAASAKTPPTSA-K 455
            ::|..|.::.   ||::||.||....:..|..:|:.:.|.              ..|.|.... :
 Worm   225 NEQLAPNEMC---DTMVCGYCRFVTSDFEEFKEHRIAGCN--------------KYKDPEEPRHR 272

  Fly   456 LLCAVCKDAFVNPWDLMVHAQAAHMVNIYELGDDEGSSNSNATTASSNNVANAAVENGHTIADVA 520
            |.||.|...|:..|.|:.|....|.:.:|.  :::.:.|..|.....:                .
 Worm   273 LKCATCSQRFLGAWGLLEHLTDFHRMLLYT--EEKMTPNDLAQMRGGS----------------V 319

  Fly   521 ATKQQMPQMPDASSTLNKEPNNNNKISNNNIISGAINGHMSPSGT 565
            :|...:|:.|.:.|.....||:.|...:::|:.||...:.|.:||
 Worm   320 STPSSIPETPASGSAAPAAPNSANSTPSHHIVEGAPLSYSSNNGT 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42458NP_996010.2 RRM <11..>89 CDD:223796 21/79 (27%)
RRM_hnRNPC_like 20..87 CDD:240787 17/68 (25%)
ztf-4NP_491976.2 RRM <64..272 CDD:223796 62/453 (14%)
RRM_SF 83..151 CDD:388407 16/67 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 113 1.000 Inparanoid score I3425
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000671
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_106780
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
65.820

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