DRSC/TRiP Functional Genomics Resources

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Protein Alignment rho-5 and rhbdl3

DIOPT Version :10

Sequence 1:NP_995679.1 Gene:rho-5 / 2768944 FlyBaseID:FBgn0041723 Length:1429 Species:Drosophila melanogaster
Sequence 2:XP_005166241.1 Gene:rhbdl3 / 550128 ZFINID:ZDB-GENE-050417-2 Length:407 Species:Danio rerio


Alignment Length:184 Identity:52/184 - (28%)
Similarity:88/184 - (47%) Gaps:23/184 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly  1092 QLYRLLTSLCMHAGILHLAITLIFQHLFLADLERLIGTVRTAIVYIMSGFAGNLTSAILVPHRPE 1156
            |.:|.|:.:.|||||.||.:.:..|.|....||.:.|.:|..:||:....||:|..::.....|.
Zfish   213 QAWRFLSYIFMHAGIEHLGLNMAMQLLVGVPLEMVHGALRIGLVYVCGALAGSLAVSVTDMTAPV 277

  Fly  1157 VGPSASLSGVVASLIALLVWMHWKYLHKPHIALFKL-LLLCSVLVGIGTLPY------------Q 1208
            ||.|..:..:|::.:|.:| |:|..: |....||:: :.|..:.|..|...:            .
Zfish   278 VGSSGGVYALVSAHLANVV-MNWSGM-KCQFKLFRMAMALVCMSVEFGRAVWLRCYPPAFPPCPN 340

  Fly  1209 LNFLGLLAGVICGCLLTMSLVPFTTFSKYGRKKKINLIWTCVLFHVVVYTAMIV 1262
            .:|:..|.||..|  ||:.:|....:.:  |.::.:|.|  :.|.  |||..|:
Zfish   341 PSFVAHLGGVAVG--LTLGVVVLQNYEQ--RLQEQSLFW--IFFS--VYTLFIL 386

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rho-5NP_995679.1 Rhomboid 1090..1225 CDD:426384 41/145 (28%)
rhbdl3XP_005166241.1 EF-hand_7 31..95 CDD:463900
Rhomboid 208..362 CDD:426384 44/152 (29%)
Blue background indicates that the domain is not in the aligned region.

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