DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rho-5 and rpn1

DIOPT Version :10

Sequence 1:NP_995679.1 Gene:rho-5 / 2768944 FlyBaseID:FBgn0041723 Length:1429 Species:Drosophila melanogaster
Sequence 2:NP_922916.1 Gene:rpn1 / 325561 ZFINID:ZDB-GENE-030131-4286 Length:598 Species:Danio rerio


Alignment Length:177 Identity:41/177 - (23%)
Similarity:56/177 - (31%) Gaps:57/177 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   322 SPAPSTSMSMVFSAASSCSPIMTATSSARSGNHRGDDSDSVIV------VPPGGGAMAQIEAENP 380
            ||.|:.|.:.....||.     |..|..:.||  ...||..|.      :||....:.:|..||.
Zfish   155 SPYPTRSQTTRVRLASK-----TVESYTKLGN--PTKSDETIEYGPFKDIPPFSQDVMKIHYENN 212

  Fly   381 SGTCLHCNTVRRTTGV---------------HQTTQTTGPISPVPISLPVPMAMPVMSGLNEQMP 430
            | ..|..:::.||..|               |......||                .|..:.|..
Zfish   213 S-PFLTISSITRTIEVSHWGNIAVEETIDLRHTGAHLKGP----------------FSRYDYQRQ 260

  Fly   431 SQSLESSMVSVQAKRLEGGGNMAVPPGSNQHQLYRSQMA--SNPRLQ 475
            |.|..||:.|.:          .:.|.|.|...||.::.  |...||
Zfish   261 SDSGISSVKSFK----------TILPASAQDVYYRDEIGNISTSHLQ 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rho-5NP_995679.1 Rhomboid 1090..1225 CDD:426384
rpn1NP_922916.1 Ribophorin_I 26..448 CDD:428028 41/177 (23%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.