DRSC/TRiP Functional Genomics Resources

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Protein Alignment rho-5 and rom-3

DIOPT Version :10

Sequence 1:NP_995679.1 Gene:rho-5 / 2768944 FlyBaseID:FBgn0041723 Length:1429 Species:Drosophila melanogaster
Sequence 2:NP_503013.2 Gene:rom-3 / 191000 WormBaseID:WBGene00004402 Length:861 Species:Caenorhabditis elegans


Alignment Length:488 Identity:189/488 - (38%)
Similarity:276/488 - (56%) Gaps:63/488 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   832 DHRPFFTYWINTVQVVVLILSIICYGIAPIGIGSEQKTGQVLVTSLSLQTVQHVEQRNLWIGPRN 896
            |.||:|||||:|||..|.|||::.||.||..:...:..|.|:..:||.:.|.::||.|.|.||..
 Worm   323 DERPWFTYWISTVQTFVCILSLLFYGFAPFALEMREARGDVMDITLSSRRVAYLEQSNPWFGPHY 387

  Fly   897 IDLVHMGAKFAACMRRDIKITEVVTKTRRHERETACCIRNDDSGCVQSSQAECSIRGLYPTKSIS 961
            .||:.:||.::.||||::::.:.:.:.||.|.:|.|||.||.|||.|||::.|       .::::
 Worm   388 ADLIRLGAVYSPCMRRELEMWKAIEEDRRIENKTGCCITNDRSGCYQSSESIC-------PRTMA 445

  Fly   962 TWKKWSPSESGPG---------------GRISGSVCGLDPKFCDAPASIAPYEWPDDITKWPICR 1011
            .|.:|....:...               .|.||:|||.||.:|..|.|:||||||||.|:|||||
 Worm   446 RWIRWDKPLTAASKKNFLTHESKTIWTQPRKSGAVCGQDPSYCRLPLSVAPYEWPDDSTQWPICR 510

  Fly  1012 KTNSFTQRYRYKDHTS----EHMVCEVIGHPCCTGLYGECRITTREYCDFIKGYFHEEASLCSQI 1072
                       ::|..    ||:.|::.|.|||....|.|||.|:|||||::|.:||.|:||||:
 Worm   511 -----------ENHNGPGLPEHLTCQITGRPCCIQFQGLCRIATKEYCDFVQGIWHENATLCSQV 564

  Fly  1073 SCLNNVCGMFPFISVETPDQLYRLLTSLCMHAGILHLAITLIFQHLFLADLERLIGTVRTAIVYI 1137
            :|...:|||.||.|.:.|:|:|||.|||.:|||::|||:::.||..|:|..|.|||:.|.||:|.
 Worm   565 NCFLGICGMIPFFSGDNPNQIYRLFTSLFIHAGVIHLALSMAFQMYFMAYQENLIGSKRMAILYF 629

  Fly  1138 MSGFAGNLTSAILVPHRPEVGPSASLSGVVASLIALLVWMHWKYLHKPHIALFK--------LLL 1194
            .||.:|||.|||.||:.|.||||::..||.:|::..| | |:::|..|....|:        ||:
 Worm   630 ASGISGNLASAIFVPYYPTVGPSSAQCGVFSSVVVEL-W-HFRHLLDPFELKFQSIAHLIVTLLV 692

  Fly  1195 LCSVLVGIGTLPYQLNFLGLLAGVICGCLLTMSLVPFTTFSKYGRKKKINLIWTCVLFHVVVYTA 1259
            ||     ||.:|:..|:..|. |.|.|.:.::.:.|:..|........:..|.:.|....:|...
 Worm   693 LC-----IGLIPWIDNWSHLF-GTIFGLITSIIVYPYMDFGDKDYDPLLQYISSTVPKSPLVQRG 751

  Fly  1260 MIVTFYIHPSEFHSISFVDMFSNSNGYDNFTNA 1292
            .:.|.         |:..|| ..:.||..:.||
 Worm   752 SMSTI---------INIADM-RTAQGYGQWANA 774

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rho-5NP_995679.1 Rhomboid 1090..1225 CDD:426384 62/142 (44%)
rom-3NP_503013.2 Rhomboid 580..724 CDD:426384 63/151 (42%)

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