DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rho-5 and rhbdf1

DIOPT Version :9

Sequence 1:NP_995679.1 Gene:rho-5 / 2768944 FlyBaseID:FBgn0041723 Length:1429 Species:Drosophila melanogaster
Sequence 2:XP_004917997.1 Gene:rhbdf1 / 100494777 XenbaseID:XB-GENE-6083739 Length:892 Species:Xenopus tropicalis


Alignment Length:913 Identity:291/913 - (31%)
Similarity:427/913 - (46%) Gaps:169/913 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   451 NMAVPPGSNQHQLYRSQMASNPRLQHIHHQTQQHQSLQVL-----PQPQNHHLSCKKRIGMYMRR 510
            |..:|...|:.:        .|.||.....||..:...|:     ..|....|:.::||.:..||
 Frog    55 NTRIPSPPNEQK--------RPNLQRQTSITQTIKRKHVMFERTSTMPVKGPLAGRRRIRLRKRR 111

  Fly   511 T--------TSQFFGVEPSTEAADCALWQGRHRRLAIRCFGMFDTEL------------------ 549
            .        |:.:|||....:|..  .||.:..|...:.:|....::                  
 Frog   112 AFSTLFCRGTADWFGVSKDNDATQ--KWQRKSLRHCSQRYGKLKPQVIREMDLPSQDNISLTSTE 174

  Fly   550 ----------EYHMQQAI-----GGGNEDAGQSNGTNGNYAPDRPDILPVQDAIGMDMTMSGDSR 599
                      :::||:.|     |........::|.:..:.|..|.   .........:.||.||
 Frog   175 TPPPLYVGPTQFNMQKIIDPLARGRAFRMVDDNDGYSMPHTPITPG---AASLCSFTSSRSGFSR 236

  Fly   600 RQKCYTNRDFLAGEFVERKASVGYMFVAMVSYLVHMFNKRRPIQMHRV-RCPWQWSRSFAPIHVQ 663
                |..|        .:|.||..|.....:.||    |.|.|:...: |.|   .|||.|....
 Frog   237 ----YPRR--------RKKESVAKMSFRAAAALV----KGRSIREGTLRRVP---RRSFTPASFL 282

  Fly   664 SHSN----QQTDA-----DGCLTDGLEAIIDDEVFFDSPCEITTSAVNDESSDIGRQAAKPRPCA 719
            ....    .:.|.     :|.|.:.|.: ..||| |:||.|   :|:.:     ..|.||     
 Frog   283 EEDTMDFPDELDTSFFAREGVLHEDLSS-YPDEV-FESPSE---AAIKE-----AEQTAK----- 332

  Fly   720 DQSGVGVSVYMAERQQNGWRTSALNSGGNATSDINLTGDQSSHQPGAAHIPLCSSVSSQMQPAMR 784
             ..||         ::.|   |||:......|.:.|..::...:....||         :||.:|
 Frog   333 -SEGV---------ERTG---SALDKSELEKSHLMLPLERGWRKQKEGHI---------LQPKVR 375

  Fly   785 SSHSTTSTC--NRGNRITAQL--------------LDGVLENSRRPPLRCIKYFSVNDLDDRTDH 833
            ......|..  .||.|||..:              :.|.|.|  |...:.|..:....::|..||
 Frog   376 LCQEVVSVSPQKRGQRITIPVKKLFAKEKRPYGLGMVGKLTN--RTYRKRIDSYVKRQIEDMDDH 438

  Fly   834 RPFFTYWINTVQVVVLILSIICYGIAPIGIGSEQKTGQVLVTSLSLQTVQHVEQRNLWIGPRNID 898
            ||||||||..|.:::.||::..|||||:|....:....||......:.|::::|.|.||||.:..
 Frog   439 RPFFTYWITVVHLLITILAVCIYGIAPVGFSQHETVESVLRNRGVYENVKYIQQENFWIGPSSEA 503

  Fly   899 LVHMGAKFAACMRRDIKITEVVTKTRRHERETACCIRNDDSGCVQSSQAECSIRGLYPTKSISTW 963
            |:|:||||:.|||:|..:.:.:...|..|:.:|||:|||.|||:|:|:.|||       .:::.|
 Frog   504 LIHLGAKFSPCMRQDQDVYKFIKINRDKEKNSACCVRNDKSGCIQTSEEECS-------STLAVW 561

  Fly   964 KKWSPSESGP-----GGRISGSVCGLDPKFCDAPASIAPYEWPDDITKWPICRKTNSFTQRYRYK 1023
            .||....|.|     ..|.|||||..||:||..|||:.|:||||||||||:|.|.:.    ..:.
 Frog   562 VKWPTHSSTPELANKSARHSGSVCHQDPRFCAEPASVTPHEWPDDITKWPVCTKNSD----GHFP 622

  Fly  1024 DHTSEHMVCEVIGHPCCTGLYGECRITTREYCDFIKGYFHEEASLCSQISCLNNVCGMFPFISVE 1088
            :|.  ||.|.:.|.|||.|..|.|.||:||||||:||||||||:||||:.|:::|||:.||:..|
 Frog   623 NHL--HMDCVITGRPCCIGTKGRCEITSREYCDFMKGYFHEEATLCSQVHCMDDVCGLLPFLDPE 685

  Fly  1089 TPDQLYRLLTSLCMHAGILHLAITLIFQHLFLADLERLIGTVRTAIVYIMSGFAGNLTSAILVPH 1153
            .|||:|||..||.:|||:||..:::.||...|.|||:|.|..|.:|:||:||..|||||||.:|:
 Frog   686 FPDQVYRLWLSLFLHAGVLHCLVSVCFQMTILRDLEKLAGWHRISIIYILSGITGNLTSAIFLPY 750

  Fly  1154 RPEVGPSASLSGVVASLIALLVWMHWKYLHKPHIALFKLLLLCSVLVGIGTLPYQLNFLGLLAGV 1218
            |.||||:.|..|::|.|...| :..|:.|.:|..|.|||..:...|...|.||:..|| ...||.
 Frog   751 RAEVGPAGSQFGILACLFVEL-FQSWQILARPWRAFFKLFAVVIFLFTFGLLPWIDNF-AHFAGF 813

  Fly  1219 ICGCLLTMSLVPFTTFSKYGRKKKINLIWTCVLFHVVVYTAMIVTFYIHPSE------FHSISFV 1277
            :.|..|:.:.:|:.:|.|:...:|...|...:|....:::.::|.||::|.:      ...|.|.
 Frog   814 VSGFFLSFAFLPYISFGKFDMYRKRCQIIIFLLIFFGLFSGLVVLFYVYPIKCEWCEYLTCIPFT 878

  Fly  1278 DMF 1280
            |.|
 Frog   879 DKF 881

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rho-5NP_995679.1 Rhomboid 1090..1225 CDD:279958 61/134 (46%)
rhbdf1XP_004917997.1 Rhomboid_SP 127..345 CDD:372211 55/269 (20%)
Rhomboid 687..827 CDD:366759 63/141 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 116 1.000 Domainoid score I5887
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002903
OrthoInspector 1 1.000 - - otm49539
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3334
SonicParanoid 1 1.000 - - X418
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.030

Return to query results.
Submit another query.