DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG33296 and Slc6a4

DIOPT Version :9

Sequence 1:NP_001285711.1 Gene:CG33296 / 2768941 FlyBaseID:FBgn0053296 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_034614.2 Gene:Slc6a4 / 15567 MGIID:96285 Length:630 Species:Mus musculus


Alignment Length:590 Identity:150/590 - (25%)
Similarity:263/590 - (44%) Gaps:75/590 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 KRGKWEKPTDYLFACFGLALKL-DIFEVSYWFFFNIGFVGMLPYFLYMVIYLVPILVVHSFMGQF 82
            :|..|.|..|:|.:..|.|:.| :|:...|..:.|.|...:|||.:..:...:|:..:...:||:
Mouse    78 ERETWGKKMDFLLSVIGYAVDLGNIWRFPYICYQNGGGAFLLPYTIMAIFGGIPLFYMELALGQY 142

  Fly    83 SSSGFIAAF-RLAPLFKGMGYVSIFLTFTTLIYYSMFVAIPLLFLINSFRPTLPW-SCEGLKSWH 145
            ..:|.|:.: ::.|:|||:||....:.|....||:..:|..|.:||:||...||| ||:  .||:
Mouse   143 HRNGCISIWKKICPIFKGIGYAICIIAFYIASYYNTIIAWALYYLISSFTDQLPWTSCK--NSWN 205

  Fly   146 NRTDEYPTLCHPTIYKQHEN--YTLGVEAPS-RLYFDYIRQDYFNTDKRFDISRPLIGLFTLSWA 207
            ...      |  |.|...:|  :||...:|: ..|..::.|        ...|:.|..|.|:||.
Mouse   206 TGN------C--TNYFAQDNITWTLHSTSPAEEFYLRHVLQ--------IHQSKGLQDLGTISWQ 254

  Fly   208 L-------IAIIFYHFSEPAK-FGKCIRYMVITTMVLVVVCFVRFLFLPGSHKLLWMYITPNTKD 264
            |       ..||::...:..| .||.:........:::.|..||...|||:.:.:..|:.||.:.
Mouse   255 LALCIMLIFTIIYFSIWKGVKTSGKVVWVTATFPYIVLSVLLVRGATLPGAWRGVVFYLKPNWQK 319

  Fly   265 FSE-GIYSTFIMALQAF---GAGWGSVIALSSFNGFKTDIMSYSWIISFGQI---FI--YIMFGL 320
            ..| |::..  .|.|.|   |.|:|.::|.:|:|.|..:....:.:.|....   |:  :::|.:
Mouse   320 LLETGVWVD--AAAQIFFSLGPGFGVLLAFASYNKFNNNCYQDALVTSVVNCMTSFVSGFVIFTV 382

  Fly   321 VSFMLEQYYKDISDTIVFHRIMNFWVLFLSSASALNTLGWPNLWTFIYYSMLLLASLTVIATQLF 385
            :.:|.|...:|:|:..   :.....:||::.|.|:..:.....:..|::.||:...|......|.
Mouse   383 LGYMAEMRNEDVSEVA---KDAGPSLLFITYAEAIANMPASTFFAIIFFLMLITLGLDSTFAGLE 444

  Fly   386 TVLQSLFDEFEKLKERKQEVTFGIICGLAICSFFFCTEHGSFYFAILGIDVILAHSLLHLLLL-- 448
            .|:.::.|||..:..:::|....|:....|.........|..|...|..:.....::|.:.|:  
Mouse   445 GVITAVLDEFPHIWAKRREWFVLIVVITCILGSLLTLTSGGAYVVTLLEEYATGPAVLTVALIEA 509

  Fly   449 LVVLWIYGQKRFQRDIEFMLG-QPFASWKV--------FILRYTAPIVFLICMILGIIECIRV-H 503
            :||.|.||..:|..|::.||| .|...|::        |:|       |:||..|.....:|: .
Mouse   510 VVVSWFYGITQFCSDVKEMLGFSPGWFWRICWVAISPLFLL-------FIICSFLMSPPQLRLFQ 567

  Fly   504 FFFKEVFLVLGIILVVLPFLAIPGYGFYYLRQSPGTFLERLKRSCRPTDWYPVEMKHRQHYGDRV 568
            :.:....::||..:.....:.||.|..|.|..:|||..||:.:|..|..  |.|:.        .
Mouse   568 YNYPHWSIILGYCIGTSSVICIPIYIIYRLISTPGTLKERIIKSITPET--PTEIP--------C 622

  Fly   569 GNIEM 573
            |:|.|
Mouse   623 GDIRM 627

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG33296NP_001285711.1 SLC5-6-like_sbd 27..496 CDD:271356 127/502 (25%)
Slc6a4NP_034614.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..63
5HT_transport_N 24..64 CDD:281488
SLC6sbd_SERT 79..615 CDD:271399 144/565 (25%)
Interaction with RAB4A. /evidence=ECO:0000250 616..624 2/17 (12%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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