DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18420 and psh

DIOPT Version :10

Sequence 1:NP_995715.1 Gene:CG18420 / 2768924 FlyBaseID:FBgn0028866 Length:299 Species:Drosophila melanogaster
Sequence 2:NP_573297.1 Gene:psh / 32832 FlyBaseID:FBgn0030926 Length:394 Species:Drosophila melanogaster


Alignment Length:263 Identity:82/263 - (31%)
Similarity:117/263 - (44%) Gaps:29/263 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 RSPLKLGPRIVNGKVAVRNSSPWMAFLH--TSSNQFICGGTLISRRLVLTAAHCF--IPNTTIVV 94
            ||..:|...||.|........|.||.:.  |....|.|||:||:.|.|||||||.  ..||...|
  Fly   135 RSGNQLVIHIVGGYPVDPGVYPHMAAIGYITFGTDFRCGGSLIASRFVLTAAHCVNTDANTPAFV 199

  Fly    95 RLGEYNRKLKGYREEHQVNRTFQ-HRFYDPNTHANDIALLRLVSNVVYKANIRPICIMWDASWKH 158
            |||..|.:...:..:..|.|:.: |..|..|.: ||||:|.|..:||...||||.|:..||:...
  Fly   200 RLGAVNIENPDHSYQDIVIRSVKIHPQYVGNKY-NDIAILELERDVVETDNIRPACLHTDATDPP 263

  Fly   159 HIDSIKVLTGTGWG------RTES---MHDSSELRTLD-----ISRQPSKMCAF-GSVLSNQFCA 208
            ......|   .|||      |..|   :....||..||     .:.||..:... ..|:.:..||
  Fly   264 SNSKFFV---AGWGVLNVTTRARSKILLRAGLELVPLDQCNISYAEQPGSIRLLKQGVIDSLLCA 325

  Fly   209 GNWN--SNLCIGDTGGPVGAMVRYRNAFRFVQVGIAITNKRCQ--RPSVFTDVMSHIEFIRRIFL 269
            .:..  ::.|.||:|||:...:...:.. :..:|:..:...|.  .|.::|.|.|:::||..|..
  Fly   326 IDQKLIADACKGDSGGPLIHELNVEDGM-YTIMGVISSGFGCATVTPGLYTRVSSYLDFIEGIVW 389

  Fly   270 TQN 272
            ..|
  Fly   390 PDN 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18420NP_995715.1 Tryp_SPc 42..264 CDD:214473 75/245 (31%)
pshNP_573297.1 CLIP 30..79 CDD:197829
Tryp_SPc 144..387 CDD:238113 77/247 (31%)
Blue background indicates that the domain is not in the aligned region.

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