DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18636 and tmprss13b

DIOPT Version :9

Sequence 1:NP_995714.2 Gene:CG18636 / 2768923 FlyBaseID:FBgn0032551 Length:349 Species:Drosophila melanogaster
Sequence 2:XP_005165399.1 Gene:tmprss13b / 564693 ZFINID:ZDB-GENE-090309-2 Length:475 Species:Danio rerio


Alignment Length:295 Identity:77/295 - (26%)
Similarity:116/295 - (39%) Gaps:90/295 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 CGIRTQSRTAYRIINGHTAKYNSSPWMVFLHSTTDMFVCGGSLITDKLVLTAAHCFIANQHLVAR 97
            ||   :...:.|||.|..|.....||...|| ......|||||:....::||||||         
Zfish   229 CG---RPPVSSRIIGGSVAAEGHWPWQASLH-FQGKHSCGGSLVAPDFIITAAHCF--------- 280

  Fly    98 LGEYERTRSEECTG--------YYCNFREE------HMVDAGFKHKLYDPNTHANDIAILRLSKS 148
                    .:|.:|        .|..|..:      :.|.....|:.|:|.|...|||:|:|:|.
Zfish   281 --------PKETSGSQLPSNWKVYIGFVSQLKLPSPYYVKEIILHEKYNPTTKNYDIALLKLNKP 337

  Fly   149 VVYRDNIRPICV------------VWDHRWRHYLDKIDLLTATGWGKTQMESDSDALQTLDIRRQ 201
            .   .::.|||:            .|               .||:|..:..|:|.:...:::...
Zfish   338 A---SDVEPICLPVIGQTFPPAKQCW---------------TTGFGVIRQGSNSVSTSLMEVTVS 384

  Fly   202 PPD--VCAK---FIGQTIAGNQFCAGNW----DSNLCNGDSGGPLGAVITHKNTQRFVQVGIASY 257
            ..|  ||..   :.|: |..|..|||:.    ||  |.|||||||..   ..|..::...|:.|:
Zfish   385 LIDSSVCNSPNVYNGE-ITENMQCAGDLRGGKDS--CQGDSGGPLAC---KSNDGQWFLTGVTSW 443

  Fly   258 TNRNC---QKASVFTDVLSHAEFILRVWRMYGKGQ 289
             ...|   .:..|::||   |::::  | :|.|.|
Zfish   444 -GEGCGQVNRPGVYSDV---AKYLM--W-IYSKMQ 471

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG18636NP_995714.2 Tryp_SPc 44..278 CDD:214473 71/271 (26%)
Tryp_SPc 45..278 CDD:238113 70/270 (26%)