DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3857 and smg-9

DIOPT Version :9

Sequence 1:NP_996330.1 Gene:CG3857 / 2768908 FlyBaseID:FBgn0023520 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_497058.1 Gene:smg-9 / 175132 WormBaseID:WBGene00013188 Length:385 Species:Caenorhabditis elegans


Alignment Length:422 Identity:98/422 - (23%)
Similarity:157/422 - (37%) Gaps:108/422 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 VSSVPTSRDKGSCSGGA---GTAGTSAGAPNALQELQPPRMN-RPTPLIVANGIFNANARKLFHK 189
            |..:.|||.  |.:|||   .||..:.|||....:.:|...: .||...|......|....:...
 Worm     4 VEILKTSRP--SSAGGAARPSTASPTHGAPKIAIKTRPVADDVAPTAATVIEPSQKAMKESVRFL 66

  Fly   190 T---------------NTDFTVIGVLGGQSSGKSTLLNLLAAERSLDYDYYQHLFSPEADECIFA 239
            |               :.:|.||..:|.|.:||||||::||...|... |.:::|.|.:.|....
 Worm    67 TDFGEISDAISDLLTSSPNFNVISAIGPQGAGKSTLLSMLAGNNSRQM-YREYVFRPVSREANEQ 130

  Fly   240 TRHKLKPNNGQKSILRPRTETLQFFITRERH-ILLDTPPL--------MPV---GKDSDHQDLY- 291
            :||                :|:|..|....| |.||..|:        :|.   |:..|...:. 
 Worm   131 SRH----------------QTIQIDIYIVNHQIFLDCQPMYSFSIMEGLPKVRGGRFDDSTAMSD 179

  Fly   292 SLGTMAQLLSVCHILILV----IDGLALEQLRLINAALRLRPTLHCKGYVR-----DHMPQVVFV 347
            :|...|.||.|.|.:::|    .|.:.::.||:   |.::||.|   ...|     |....:||:
 Worm   180 TLRLTAFLLYVSHTVLVVSETHYDKVIIDTLRV---AEQIRPYL---AIFRPKLAIDRKTNLVFI 238

  Fly   348 RARAHRIDFE---IQQRERLDKKLAYLYGPTGLPIYRGRGDARCLNT--------FLLPEVSSNK 401
            :.:|..||..   |::||.| .:|::             .|:|.|..        .:|.|:...:
 Worm   239 KTKASSIDLAPTVIREREEL-LRLSF-------------QDSRWLKVSQEPFKTLIVLEEIRVRR 289

  Fly   402 ATAFH--------SCLGEL---VRQFRERILGCTRISMCHTSTELSEAIWFEILAESAR-----K 450
            ...|.        :.|.|.   :.:.||. |...|......:..:.|..|.::..|..|     |
 Worm   290 EHLFEEGDEPDEAASLNEFDEQIAELREE-LQKNREDFTVETAAMDEKKWLDMCREVIRDKTLHK 353

  Fly   451 AAPHFEKIYAEIKLRHLDTRCQWRSDNWRTFS 482
            ....:::...:....|.|.......|..:.||
 Worm   354 TLKEYQRAMTDGVRTHFDNGFHAERDANKFFS 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3857NP_996330.1 P-loop_NTPase 188..>318 CDD:304359 40/161 (25%)
smg-9NP_497058.1 P-loop_NTPase 88..>108 CDD:304359 11/19 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166438
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4181
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1436399at2759
OrthoFinder 1 1.000 - - FOG0008337
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_105416
Panther 1 1.100 - - LDO PTHR14270
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2801
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.780

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