DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3857 and smg9

DIOPT Version :10

Sequence 1:NP_996330.1 Gene:CG3857 / 2768908 FlyBaseID:FBgn0023520 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_001135618.1 Gene:smg9 / 100216177 XenbaseID:XB-GENE-990837 Length:508 Species:Xenopus tropicalis


Alignment Length:526 Identity:123/526 - (23%)
Similarity:205/526 - (38%) Gaps:135/526 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PRRRFRNKKRDEACSGLLAPVTIARREDAARMMQPKILLKKDRDREQETWD-RERDKDRKLER-- 65
            |.|..|.:..|:...|.|      ...:..|...|.:     |||:|:.|: .|......:::  
 Frog    14 PGRNRRRRWMDQGPPGHL------NLSEPGREKDPML-----RDRDQDRWEGNEEGYGYTIQKTP 67

  Fly    66 --------DREAEPSPSCYPDTPPALKTMIVNRTGE----VRPADRCQM-PLAGGALVQGSGQLS 117
                    ||....:|:.   .||..|.:::.:..|    ..||:.... |....|.|:..||..
 Frog    68 IILAKPTSDRTKAATPAA---PPPMEKPIVLMKAREDGKPAAPAEGATAPPPTAVAKVEKEGQRP 129

  Fly   118 AVPSSSVCAALVSSVPTSRDKGSCSGGAGTAGTSAGAPNALQELQPPRMNRPTPLIVANGIFNAN 182
            ..|...:         .:|..|:.:..:|......|.    .:|.||:..:.:..:|...:...:
 Frog   130 TQPVYQI---------QNRGMGAAASASGNVDPVVGQ----AKLLPPQKMKHSIKLVDEYMNWCD 181

  Fly   183 ARKLFHKTNTDFTVIGVLGGQSSGKSTLLNLLAAERSLDYDYYQHLFSPEADECIFATRHKLKPN 247
            :...|....||..|:|:||.|.:|||||::||:| .|.|.|...::|..::.|        ::..
 Frog   182 SAIEFLLDQTDVLVVGILGLQGTGKSTLMSLLSA-NSPDDDQRSYVFRMQSQE--------VRER 237

  Fly   248 NGQKSILRPRTETLQFFITRERHILLDTPPLMP-------VGKD----------SDHQDLYSLGT 295
            .|.      :|..:.|||::||.|.|||.|::.       :..|          ..:.::.||..
 Frog   238 AGN------QTSGIDFFISQERIIFLDTQPILSPAILDHLINNDRKLPPEYNLPHTYVEMQSLQI 296

  Fly   296 MAQLLSVCHILILVIDGLA-LEQLRLINAALRLRPTLHCKGYVR----------DHMPQVVFVRA 349
            .|.|.:|||::|:|.|... ....|.:..|..|:|:.....:..          ::.|.||||:.
 Frog   297 AAFLFTVCHVVIVVQDWFTDFNLYRFLQTAEMLKPSTPSPSHESSGSSGSDEGIEYYPHVVFVQN 361

  Fly   350 RAHRIDF---EIQQRERLDKKL---AYL-YGPT----------GLPIYRGRGDARCLNTFLLP-- 395
            :|.|.|:   .::|...:..||   ::| |..|          |||......:   :|.||:|  
 Frog   362 KAKREDYCPRTLKQMHTVIDKLMLHSHLRYKGTLSMLDCNIFPGLPYDFIESE---VNLFLIPTM 423

  Fly   396 -----EVSSNKAT----------------AFHSCLGELVRQFRERILGCTRISMCHTSTELSEAI 439
                 |..|...|                :|||    |:.:.|.:|:..:|..:.||.  |:|..
 Frog   424 ESDVDETISRAGTSGIPLFSLLPAYKGHPSFHS----LISRLRSQIMSMSRPQLSHTI--LTEKN 482

  Fly   440 WFEILA 445
            ||...|
 Frog   483 WFHYAA 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3857NP_996330.1 P-loop containing Nucleoside Triphosphate Hydrolases 188..>318 CDD:476819 43/147 (29%)
smg9NP_001135618.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..60 14/56 (25%)

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