DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic4 and Dic61B

DIOPT Version :10

Sequence 1:NP_001368966.1 Gene:Sdic4 / 2768886 FlyBaseID:FBgn0053499 Length:554 Species:Drosophila melanogaster
Sequence 2:NP_728477.1 Gene:Dic61B / 38020 FlyBaseID:FBgn0263988 Length:764 Species:Drosophila melanogaster


Alignment Length:640 Identity:128/640 - (20%)
Similarity:227/640 - (35%) Gaps:184/640 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 RSTYSTLSGGKKQPLNLSVYNV--QATNIPPKETL----------VYTK---------------- 46
            ||:.....||.||.::..:..:  :..|..|..|:          .|||                
  Fly   123 RSSVRAGIGGNKQSIDDLMNGILYETINWEPYSTVEALEEAYEPKPYTKSFLKITLRKSDFFEIH 187

  Fly    47 -QTQTT-STGGGNGDVLAFDAQGDDEESSLQNLGNG----------------FTSK--------- 84
             ||||| :.|...||    ||:.|:.......:|.|                ||::         
  Fly   188 SQTQTTVAKGSPEGD----DAERDNRNYEYLTIGKGKIRRRSDNDAQTDTLLFTTRAVNTILITK 248

  Fly    85 ------------------LPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQM-- 129
                              :...:.|..:.:|||:..|:...|.....|..:.|.|..:...|:  
  Fly   249 ATVSSYVSNFEMYDTLNNITKEFATATMSSVKDLTSALAQTEDADTFEDDEAVAEKDKVSSQIER 313

  Fly   130 IILSENFQRFVVRAGRVIERALSE-------NVDIYTDYIGGGDSEEANDERSHARLSLNRVF-- 185
            :..|..|:..::..||.:....:|       |.|         ..|..|.|..:. .|:|.:|  
  Fly   314 LFRSPEFRNAIMYMGRTLSSNTNEAGLRRFRNFD---------QVERWNAEAEYV-YSMNLLFRL 368

  Fly   186 -----YDERWSKNRCITSMDWSTHFPELVVGSY----HNNEESPNEPDGVVMVWNTKFKKSTPED 241
                 .|||    :.::.:|:.....:::..:|    .:::..|.  .|.|.:|:.| ....||.
  Fly   369 VPEPSKDER----KAVSDIDFCRSNGDILAVAYGLYSFSSQHVPT--SGSVFLWSIK-NPGEPER 426

  Fly   242 VFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVG- 305
            .::....|.:..|:.|.|:|:..|.|.|.:.:.|....:.||:..:..|.:..:.||..::.:. 
  Fly   427 AYYYDVPVTAINFSPFLPSLLAIGLYDGSVEVRDVSSLQDTPVAVSQRSTSPGSSPVVAIRWIKQ 491

  Fly   306 -TQNAHNV-----ISISSDGKLCSW----SLDMLSQPQDTLELQQRQSKAIAI-TSMAFPANEIN 359
             :.:.|..     :|:|.||.:..:    |..:|...|..||..:...:.|.: .|...|. |.|
  Fly   492 VSDDDHETDIDPFLSLSQDGSVTRFRIIKSPFLLGFTQMILERVEGHPEGIFVHPSSRIPC-ESN 555

  Fly   360 SLVMG----------------SEDGYVYSASRHGLRSGVN------EVYERHLGPITGISTHYNQ 402
            ....|                :::|.::..|       :|      ||...|.|.:|.:     :
  Fly   556 RHPQGLSITTHPLHKDIYYVLTDEGCIHKCS-------INYQHQYLEVLRCHDGGVTVM-----E 608

  Fly   403 LSPDFGHLFLTSS----IKIWSLKLPISSCQFSVVSGINSNKPLYSFEDNSDYMMDVAWSPVHPA 463
            .||....||||..    ::||             |.||  .:||....|....:....|||.|..
  Fly   609 FSPWSPKLFLTCGNDWFVRIW-------------VDGI--TRPLLELLDEMTPVHWAKWSPTHST 658

  Fly   464 LFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVS-WTPSGLHVCIGDEAG 517
            :...|:.. ..::|:..::...|.:...:..  :.|.|: ::..|..:.||:|.|
  Fly   659 IIVTVNRE-TANVWDFRRNLLRPMSKHKMDS--SFNTVARFSHCGRTLVIGNERG 710

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic4NP_001368966.1 Dynein_IC2 21..51 CDD:463291 11/58 (19%)
WD40 196..523 CDD:475233 75/365 (21%)
WD40 repeat 196..245 CDD:293791 9/52 (17%)
WD40 repeat 251..289 CDD:293791 10/37 (27%)
WD40 repeat 298..337 CDD:293791 9/49 (18%)
WD40 repeat 349..446 CDD:293791 26/122 (21%)
WD40 repeat 452..490 CDD:293791 7/37 (19%)
WD40 repeat 498..524 CDD:293791 7/21 (33%)
Dic61BNP_728477.1 WD40 repeat 381..429 CDD:293791 9/50 (18%)
WD40 433..711 CDD:475233 66/309 (21%)
WD40 repeat 434..473 CDD:293791 11/38 (29%)
WD40 repeat 552..599 CDD:293791 8/54 (15%)
WD40 <594..>710 CDD:441893 32/138 (23%)
WD40 repeat 604..637 CDD:293791 12/52 (23%)
WD40 repeat 645..682 CDD:293791 7/37 (19%)
WD40 repeat 691..727 CDD:293791 7/20 (35%)

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