DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic4 and Dic61B

DIOPT Version :9

Sequence 1:NP_001368966.1 Gene:Sdic4 / 2768886 FlyBaseID:FBgn0053499 Length:554 Species:Drosophila melanogaster
Sequence 2:NP_728477.1 Gene:Dic61B / 38020 FlyBaseID:FBgn0263988 Length:764 Species:Drosophila melanogaster


Alignment Length:640 Identity:128/640 - (20%)
Similarity:227/640 - (35%) Gaps:184/640 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 RSTYSTLSGGKKQPLNLSVYNV--QATNIPPKETL----------VYTK---------------- 46
            ||:.....||.||.::..:..:  :..|..|..|:          .|||                
  Fly   123 RSSVRAGIGGNKQSIDDLMNGILYETINWEPYSTVEALEEAYEPKPYTKSFLKITLRKSDFFEIH 187

  Fly    47 -QTQTT-STGGGNGDVLAFDAQGDDEESSLQNLGNG----------------FTSK--------- 84
             ||||| :.|...||    ||:.|:.......:|.|                ||::         
  Fly   188 SQTQTTVAKGSPEGD----DAERDNRNYEYLTIGKGKIRRRSDNDAQTDTLLFTTRAVNTILITK 248

  Fly    85 ------------------LPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQM-- 129
                              :...:.|..:.:|||:..|:...|.....|..:.|.|..:...|:  
  Fly   249 ATVSSYVSNFEMYDTLNNITKEFATATMSSVKDLTSALAQTEDADTFEDDEAVAEKDKVSSQIER 313

  Fly   130 IILSENFQRFVVRAGRVIERALSE-------NVDIYTDYIGGGDSEEANDERSHARLSLNRVF-- 185
            :..|..|:..::..||.:....:|       |.|         ..|..|.|..:. .|:|.:|  
  Fly   314 LFRSPEFRNAIMYMGRTLSSNTNEAGLRRFRNFD---------QVERWNAEAEYV-YSMNLLFRL 368

  Fly   186 -----YDERWSKNRCITSMDWSTHFPELVVGSY----HNNEESPNEPDGVVMVWNTKFKKSTPED 241
                 .|||    :.::.:|:.....:::..:|    .:::..|.  .|.|.:|:.| ....||.
  Fly   369 VPEPSKDER----KAVSDIDFCRSNGDILAVAYGLYSFSSQHVPT--SGSVFLWSIK-NPGEPER 426

  Fly   242 VFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVG- 305
            .::....|.:..|:.|.|:|:..|.|.|.:.:.|....:.||:..:..|.:..:.||..::.:. 
  Fly   427 AYYYDVPVTAINFSPFLPSLLAIGLYDGSVEVRDVSSLQDTPVAVSQRSTSPGSSPVVAIRWIKQ 491

  Fly   306 -TQNAHNV-----ISISSDGKLCSW----SLDMLSQPQDTLELQQRQSKAIAI-TSMAFPANEIN 359
             :.:.|..     :|:|.||.:..:    |..:|...|..||..:...:.|.: .|...|. |.|
  Fly   492 VSDDDHETDIDPFLSLSQDGSVTRFRIIKSPFLLGFTQMILERVEGHPEGIFVHPSSRIPC-ESN 555

  Fly   360 SLVMG----------------SEDGYVYSASRHGLRSGVN------EVYERHLGPITGISTHYNQ 402
            ....|                :::|.::..|       :|      ||...|.|.:|.:     :
  Fly   556 RHPQGLSITTHPLHKDIYYVLTDEGCIHKCS-------INYQHQYLEVLRCHDGGVTVM-----E 608

  Fly   403 LSPDFGHLFLTSS----IKIWSLKLPISSCQFSVVSGINSNKPLYSFEDNSDYMMDVAWSPVHPA 463
            .||....||||..    ::||             |.||  .:||....|....:....|||.|..
  Fly   609 FSPWSPKLFLTCGNDWFVRIW-------------VDGI--TRPLLELLDEMTPVHWAKWSPTHST 658

  Fly   464 LFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVS-WTPSGLHVCIGDEAG 517
            :...|:.. ..::|:..::...|.:...:..  :.|.|: ::..|..:.||:|.|
  Fly   659 IIVTVNRE-TANVWDFRRNLLRPMSKHKMDS--SFNTVARFSHCGRTLVIGNERG 710

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic4NP_001368966.1 Dynein_IC2 23..51 CDD:402922 9/56 (16%)
WD40 196..523 CDD:421866 75/365 (21%)
WD40 repeat 196..245 CDD:293791 9/52 (17%)
WD40 repeat 251..289 CDD:293791 10/37 (27%)
WD40 repeat 298..337 CDD:293791 9/49 (18%)
WD40 repeat 349..446 CDD:293791 26/122 (21%)
WD40 repeat 452..490 CDD:293791 7/37 (19%)
WD40 repeat 498..524 CDD:293791 7/21 (33%)
Dic61BNP_728477.1 WD40 358..730 CDD:225201 81/392 (21%)
WD40 repeat 381..429 CDD:293791 9/50 (18%)
WD40 433..711 CDD:295369 66/309 (21%)
WD40 repeat 434..473 CDD:293791 11/38 (29%)
WD40 repeat 552..599 CDD:293791 8/54 (15%)
WD40 repeat 604..637 CDD:293791 12/52 (23%)
WD40 repeat 645..682 CDD:293791 7/37 (19%)
WD40 repeat 691..727 CDD:293791 7/20 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45435304
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR12442
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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