DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic4 and prp-17

DIOPT Version :9

Sequence 1:NP_001368966.1 Gene:Sdic4 / 2768886 FlyBaseID:FBgn0053499 Length:554 Species:Drosophila melanogaster
Sequence 2:NP_492851.1 Gene:prp-17 / 172999 WormBaseID:WBGene00018625 Length:567 Species:Caenorhabditis elegans


Alignment Length:557 Identity:106/557 - (19%)
Similarity:206/557 - (36%) Gaps:163/557 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 RSTYSTLSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGN--GDVLAFDAQ------ 66
            ||..:||: |..:|.:|:.::.. ..|...:||.|. |..|..:|..:  |||...:|:      
 Worm    88 RSQKNTLT-GFVEPAHLNEFHFN-RQIRSFDTLGYA-QNPTAESGTTHFVGDVKKAEAEKGVSLF 149

  Fly    67 -----GDDEESSLQNLG----NGFTSKLPPGYLTHGLP-----TVKDVAPAITPLEIKKETEVKK 117
                 |.::...::|..    :|:|.           |     ..|.||        |...|::|
 Worm   150 ESKKTGGEKRKRVRNDDSADIDGYTG-----------PWSRFIDEKTVA--------KPTPELQK 195

  Fly   118 EVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARL--- 179
            :::|:.:::::.   |..|::....:.::.|.:.:.::            :||.|.:..:.|   
 Worm   196 QMDEIVKKRQEK---SRRFKKEKEDSEQMAEESSTLHL------------KEAEDYQGRSFLVPP 245

  Fly   180 SLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFH 244
            |...|...|.:...||..        |:.:|.:|..:.:..|     .:.|   |.||.      
 Worm   246 SFTGVNLREDYVPERCFV--------PKKLVHTYRGHNKGVN-----FLQW---FPKSA------ 288

  Fly   245 CQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPV--YCLQMVGTQ 307
                           :|.|..:...:|.||:  |..|..:.||   .|.|..||  ......||:
 Worm   289 ---------------HLFLSCSMDTKIKLWE--VYDRQRVVRT---YAGHKLPVREVAFNNEGTE 333

  Fly   308 NAHNVISISSDGKLCSWSLDMLSQPQDTLELQQR-QSKAIAITSMAFPANEINSL-VMGSEDGYV 370
                .:|.|.|..:..|.       .:|.:::|| .:..:.......|.::.|.: ::|.::..:
 Worm   334 ----FLSASFDRYVKLWD-------TETGQVKQRFHTGHVPYCLKYHPDDDKNHMFLVGMQNKKI 387

  Fly   371 YSASRHGLRSG-VNEVYERHLGPITGI-----STHYNQLSPDFGHLFLTSSIKIWSLKLPISSCQ 429
            .   :...||| :.:.|:|||..:..|     :..:...|.|       .|::||..::|:.:  
 Worm   388 I---QWDSRSGEIVQEYDRHLQAVNSITFFDKNRRFASTSDD-------KSVRIWEWEIPVDT-- 440

  Fly   430 FSVVSGINSNK-PLYSFEDNSDYM----MDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTAS 489
             .::..:..:. |..:...|..::    ||                 .|:.|:.|..|....:..
 Worm   441 -KLIQNVGLHAIPTMTKSPNDKWVVGQCMD-----------------NRIVLFQLVDDKLRFSKK 487

  Fly   490 IVVAGAPALN---RVSWTPSGLHVCIGDEAGKLYVYD 523
            ....|..|..   .:.::|....:..||..|||:::|
 Worm   488 KAFRGHNAAGYACNIDFSPDQSFLISGDADGKLFIWD 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic4NP_001368966.1 Dynein_IC2 23..51 CDD:402922 7/27 (26%)
WD40 196..523 CDD:421866 63/344 (18%)
WD40 repeat 196..245 CDD:293791 8/48 (17%)
WD40 repeat 251..289 CDD:293791 9/37 (24%)
WD40 repeat 298..337 CDD:293791 8/40 (20%)
WD40 repeat 349..446 CDD:293791 18/104 (17%)
WD40 repeat 452..490 CDD:293791 6/41 (15%)
WD40 repeat 498..524 CDD:293791 7/29 (24%)
prp-17NP_492851.1 WD40 267..567 CDD:238121 63/333 (19%)
WD40 repeat 279..317 CDD:293791 14/71 (20%)
WD40 repeat 322..359 CDD:293791 10/47 (21%)
WD40 repeat 364..402 CDD:293791 6/40 (15%)
WD40 repeat 408..443 CDD:293791 7/44 (16%)
WD40 repeat 451..491 CDD:293791 8/56 (14%)
WD40 repeat 500..523 CDD:293791 6/22 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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