DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic4 and Dync1i2

DIOPT Version :9

Sequence 1:NP_001368966.1 Gene:Sdic4 / 2768886 FlyBaseID:FBgn0053499 Length:554 Species:Drosophila melanogaster
Sequence 2:NP_446332.2 Gene:Dync1i2 / 116659 RGDID:620174 Length:638 Species:Rattus norvegicus


Alignment Length:542 Identity:286/542 - (52%)
Similarity:375/542 - (69%) Gaps:61/542 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 PLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDAQGDDEESSLQNLGNGFTSKLPP 87
            |:.|.:..:...:.||:|.:.|||:|||..|.         ..:.|:||..              
  Rat   135 PIKLGMAKITQVDFPPREIVTYTKETQTPVTA---------QPKEDEEEED-------------- 176

  Fly    88 GYLTHGLPTVKDVAPAITPLEIKKETEVKKE--------VNELSEEQKQMIILSENFQRFVVRAG 144
                       |||....|:|.::|..:||:        .:||:||:||.|:.||.|..|...:.
  Rat   177 -----------DVAAPKPPVEPEEEKILKKDEENDSKAPPHELTEEEKQQILHSEEFLSFFDHST 230

  Fly   145 RVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELV 209
            |::||||||.::|:.||.|....::..:.::.|:|||||.|:||||||:|.::.:|||:.:|||:
  Rat   231 RIVERALSEQINIFFDYSGRDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELL 295

  Fly   210 VGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLW 274
            |.||:||||:|:|||||.:|||.|:||:|||.||||||||||..||||:|||::|||||||||||
  Rat   296 VASYNNNEEAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLW 360

  Fly   275 DNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQ 339
            |||..||||:||||||||||||||||:.:||||||||:||||:|||:|||||||||.|||::||.
  Rat   361 DNRSNKRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELV 425

  Fly   340 QRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLS 404
            .:||||:|:|||:||..::|:.|:|||:|.||:|.|||.::|::|::|.|.||||||..|....:
  Rat   426 HKQSKAVAVTSMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHAAVGA 490

  Fly   405 PDFGHLFLTSS----IKIWSLKLPISSCQFSVVSGINSNKPLYSFEDNSDYMMDVAWSPVHPALF 465
            .||.|||:|||    :|:|:.|               :|||||||||||||:.||.|||.|||||
  Rat   491 VDFSHLFVTSSFDWTVKLWTTK---------------NNKPLYSFEDNSDYVYDVMWSPTHPALF 540

  Fly   466 AAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQ 530
            |.|||.|||||||||.|||||||||.|.|.||||||.||.||..:.:||..|::.:|||.|.:|.
  Rat   541 ACVDGMGRLDLWNLNNDTEVPTASISVEGNPALNRVRWTHSGREIAVGDSEGQIVIYDVGEQIAV 605

  Fly   531 PSRDEWSRFNTHLSEIKMNQSD 552
            |..|||:||...|:||..:::|
  Rat   606 PRNDEWARFGRTLAEINASRAD 627

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic4NP_001368966.1 Dynein_IC2 23..51 CDD:402922 10/27 (37%)
WD40 196..523 CDD:421866 212/330 (64%)
WD40 repeat 196..245 CDD:293791 30/48 (63%)
WD40 repeat 251..289 CDD:293791 29/37 (78%)
WD40 repeat 298..337 CDD:293791 30/38 (79%)
WD40 repeat 349..446 CDD:293791 45/100 (45%)
WD40 repeat 452..490 CDD:293791 30/37 (81%)
WD40 repeat 498..524 CDD:293791 12/25 (48%)
Dync1i2NP_446332.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..135 286/542 (53%)
Interaction with DYNLT1. /evidence=ECO:0000269|PubMed:27502274 133..165 11/29 (38%)
Dynein_IC2 135..163 CDD:402922 10/27 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 154..209 19/88 (22%)
WD 1 277..326 29/48 (60%)
WD40 repeat 282..331 CDD:293791 30/48 (63%)
WD40 329..>599 CDD:225201 184/284 (65%)
WD 2 330..370 32/39 (82%)
WD40 repeat 339..377 CDD:293791 30/37 (81%)
WD 3 379..420 33/40 (83%)
WD40 repeat 385..426 CDD:293791 31/40 (78%)
WD 4 429..469 22/39 (56%)
WD40 repeat 434..481 CDD:293791 24/46 (52%)
WD 5 474..519 23/59 (39%)
WD40 repeat 489..521 CDD:293791 17/46 (37%)
WD40 repeat 527..565 CDD:293791 30/37 (81%)
WD 6 568..607 19/38 (50%)
WD40 repeat 573..599 CDD:293791 12/25 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166334330
Domainoid 1 1.000 378 1.000 Domainoid score I818
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37921
Inparanoid 1 1.050 618 1.000 Inparanoid score I852
OMA 1 1.010 - - QHG54336
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 1 1.000 - - FOG0001314
OrthoInspector 1 1.000 - - mtm9006
orthoMCL 1 0.900 - - OOG6_101571
Panther 1 1.100 - - O PTHR12442
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X812
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.910

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