DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic4 and dnai3

DIOPT Version :9

Sequence 1:NP_001368966.1 Gene:Sdic4 / 2768886 FlyBaseID:FBgn0053499 Length:554 Species:Drosophila melanogaster
Sequence 2:NP_001120428.1 Gene:dnai3 / 100145513 XenbaseID:XB-GENE-980327 Length:896 Species:Xenopus tropicalis


Alignment Length:605 Identity:118/605 - (19%)
Similarity:206/605 - (34%) Gaps:203/605 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 KDVAPAITPLEIKKETEVK----------KEVNELSEEQKQMIILSENFQRFVVRAGRVIERALS 152
            :|....:.|...:..|:.|          ....|.:||:::..:.|::|:.||......:|.||.
 Frog   240 RDTGIQVVPFTQENSTQTKWGYPRNACTQYTPREFTEEERKACLSSKDFKDFVNSVSLRLELALQ 304

  Fly   153 ENVDIYTDYIGGGD--SEEAN--DERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSY 213
            :| :|...::....  |||.|  ..:|.:.|..::.|.|..:|..:.|:.::|......||..|.
 Frog   305 QN-EIMNAFLDDWKALSEEENTFGGKSDSHLKESQSFTDHLFSNAKTISGINWHPKIHGLVAVSM 368

  Fly   214 HNN---EESPN-------EPDGVVMVW------NTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLI 262
            ...   |:..|       :| .:::.|      :.:.....|:|::..|       |...:||:|
 Frog   369 TERLSFEDRVNISSKILLKP-SLILFWSFTDPLHPQLMLECPDDIYCFQ-------FCPSDPNII 425

  Fly   263 LGGTYSGQIVLWD-----------NRVQKRTP---------------IQRTPLSAAAHTH----- 296
            .||.::||:||||           ..|.|.|.               ::...:|:..|.|     
 Frog   426 AGGCFNGQVVLWDISKYQESLMAKAGVSKNTAPKTGLEPSVPKGPQLVRYCAVSSIEHGHKNVIT 490

  Fly   297 ----------------PV-----YCLQMV----------------------------GTQNAHNV 312
                            |.     ||||:|                            ..|..|.|
 Frog   491 DIHWLPNNFELSNAGNPYENKSGYCLQLVTCSPDCSIMFWDIRPQKTLTAAEKKNVEDKQMPHGV 555

  Fly   313 --------------------------------ISISSDGKLCSWSLDMLSQPQDTLELQQRQS-- 343
                                            ||:|.:...|        :..|.|::|.::.  
 Frog   556 PDTFKYIDLTWRPFIRAILPKSDMSGEYSPMKISLSEEHHHC--------RTLDKLQIQAKEDKT 612

  Fly   344 ------KAIAITSMAFP--ANEINS-LVMGSEDG-YVYSASRHGLRSGVNEVYER--------HL 390
                  |::...|...|  .::||: ..:|:||| .||:..:....|...::...        |.
 Frog   613 EGVVEYKSLRAASAKNPKLLDDINTKYFVGTEDGELVYTDWKMEKDSDTGKLISSKPLQANILHD 677

  Fly   391 GPITGISTHYNQLSPDFGHLFLTS---SIKIWSLKLPISSCQFSVVSGINSNKPLYSFEDNSDYM 452
            |.:..:     |.||......||.   :..||.             .|:.|. |::....:...:
 Frog   678 GAVNTV-----QRSPFLKDFILTVGGWNFAIWR-------------EGVTSG-PIFHSCCSQKRL 723

  Fly   453 MDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLH--VCIGDE 515
            ....||.....:|......|.:|:|:|.:.|..|:.:..:|.||......|..|...  :.:||:
 Frog   724 TAAHWSLSRTGVFFIGKEDGNVDVWDLLEKTHEPSQTQNIAAAPITYIRPWIASSKQHFLAVGDD 788

  Fly   516 AGKLYVYDVAENLAQPSRDE 535
            .|.|::.::..||..||.:|
 Frog   789 QGTLHILEIPWNLRHPSANE 808

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic4NP_001368966.1 Dynein_IC2 23..51 CDD:402922
WD40 196..523 CDD:421866 88/479 (18%)
WD40 repeat 196..245 CDD:293791 11/64 (17%)
WD40 repeat 251..289 CDD:293791 15/63 (24%)
WD40 repeat 298..337 CDD:293791 13/103 (13%)
WD40 repeat 349..446 CDD:293791 23/111 (21%)
WD40 repeat 452..490 CDD:293791 9/37 (24%)
WD40 repeat 498..524 CDD:293791 6/27 (22%)
dnai3NP_001120428.1 WD40 <343..>548 CDD:225201 37/212 (17%)
WD40 repeat 723..763 CDD:293791 9/39 (23%)
WD40 repeat 769..814 CDD:293791 11/40 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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