DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic4 and dync1i1

DIOPT Version :9

Sequence 1:NP_001368966.1 Gene:Sdic4 / 2768886 FlyBaseID:FBgn0053499 Length:554 Species:Drosophila melanogaster
Sequence 2:NP_001106382.1 Gene:dync1i1 / 100127187 XenbaseID:XB-GENE-490874 Length:627 Species:Xenopus tropicalis


Alignment Length:536 Identity:276/536 - (51%)
Similarity:365/536 - (68%) Gaps:54/536 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDAQGDDEESSLQNLGNGFTSKLPPG 88
            :.|.|..|...:..|:|.:.|:|:|||        .|.....:.::|:..:.:|.....|:    
 Frog   129 IKLGVSKVTQVDFLPREVVSYSKETQT--------PVTTHQTEEEEEDEEMVDLKTEHDSE---- 181

  Fly    89 YLTHGLPTVKDVAPAITPLEIKKETEVKKEV--NELSEEQKQMIILSENFQRFVVRAGRVIERAL 151
                              .|.::|.:..:||  .||:||:||.:..||.|..|..|..|||||||
 Frog   182 ------------------FENQEEKQDSREVPPRELTEEEKQQVTHSEEFLIFFDRTIRVIERAL 228

  Fly   152 SENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNN 216
            :|:.:|:.||.|....::..|.::.|.||.||.||||.|||:|.:|.:|||..:|||:|.||:||
 Frog   229 AEDSNIFFDYSGRDLEDKEGDIQAGANLSFNRQFYDEHWSKHRVVTCLDWSLQYPELMVASYNNN 293

  Fly   217 EESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKR 281
            |::|:|||||.:|||.||:|:|||.:|||||:|||.|||:|:|||::||||||||||||||..:|
 Frog   294 EDAPHEPDGVALVWNMKFRKTTPEYIFHCQSSVMSVCFARFHPNLVIGGTYSGQIVLWDNRSHRR 358

  Fly   282 TPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAI 346
            ||:|||||||||||||:||:.:||||||||:|::|:|||||||||||||.||:::||...:||.:
 Frog   359 TPVQRTPLSAAAHTHPIYCVNVVGTQNAHNLITVSTDGKLCSWSLDMLSAPQESMELVYNKSKPV 423

  Fly   347 AITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSP-DFGHL 410
            |:|.||||..::|:.|:|||:|.||:|.|||.::|::||:|.|.||:|||:.| |.:.| ||.||
 Frog   424 AVTGMAFPTGDVNNFVVGSEEGTVYTACRHGSKAGISEVFEGHQGPVTGINCH-NAVGPIDFSHL 487

  Fly   411 FLTSS----IKIWSLKLPISSCQFSVVSGINSNKPLYSFEDNSDYMMDVAWSPVHPALFAAVDGS 471
            |||||    :|:|:.|               .||||||||||:||:.||.||||||||||.|||.
 Frog   488 FLTSSFDWTVKLWTTK---------------HNKPLYSFEDNADYVCDVTWSPVHPALFACVDGM 537

  Fly   472 GRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEW 536
            |||||||||.||||||||..|.||.|||||.|..||..|.:||..|::::|||.| .:.|..|||
 Frog   538 GRLDLWNLNNDTEVPTASTAVEGASALNRVRWAQSGKEVAVGDSEGRVWIYDVGE-FSIPHNDEW 601

  Fly   537 SRFNTHLSEIKMNQSD 552
            |||...|.||:.|:.:
 Frog   602 SRFARTLMEIRANRGE 617

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic4NP_001368966.1 Dynein_IC2 23..51 CDD:402922 9/26 (35%)
WD40 196..523 CDD:421866 206/331 (62%)
WD40 repeat 196..245 CDD:293791 29/48 (60%)
WD40 repeat 251..289 CDD:293791 28/37 (76%)
WD40 repeat 298..337 CDD:293791 27/38 (71%)
WD40 repeat 349..446 CDD:293791 48/101 (48%)
WD40 repeat 452..490 CDD:293791 31/37 (84%)
WD40 repeat 498..524 CDD:293791 12/25 (48%)
dync1i1NP_001106382.1 Dynein_IC2 129..156 CDD:288403 10/34 (29%)
WD40 180..598 CDD:225201 253/456 (55%)
BALF1 <221..>276 CDD:115513 27/54 (50%)
WD40 266..589 CDD:295369 210/338 (62%)
WD40 repeat 274..319 CDD:293791 28/44 (64%)
WD40 repeat 329..368 CDD:293791 29/38 (76%)
WD40 repeat 376..419 CDD:293791 29/42 (69%)
WD40 repeat 425..464 CDD:293791 20/38 (53%)
WD40 repeat 480..512 CDD:293791 19/46 (41%)
WD40 repeat 518..556 CDD:293791 31/37 (84%)
WD40 repeat 564..590 CDD:293791 12/25 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 376 1.000 Domainoid score I857
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 613 1.000 Inparanoid score I890
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 1 1.000 - - FOG0001314
OrthoInspector 1 1.000 - - mtm9426
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X812
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
77.060

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