DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic2 and sw

DIOPT Version :9

Sequence 1:NP_001285481.1 Gene:Sdic2 / 2768883 FlyBaseID:FBgn0053497 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_477075.2 Gene:sw / 44160 FlyBaseID:FBgn0003654 Length:663 Species:Drosophila melanogaster


Alignment Length:571 Identity:523/571 - (91%)
Similarity:528/571 - (92%) Gaps:36/571 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LRSTYSTLSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAF---------- 63
            |::|.:..|||||||||||||||||||||||||||||||||||||||||||||:.          
  Fly    93 LQATVNGQSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLSCHSSPLSGYME 157

  Fly    64 --------------------------DAQGDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAP 102
                                      |...|||||||||||||||||||||||||||||||||||
  Fly   158 DWWRPRKAHATDYYDEYNLNPGLEWEDEFTDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAP 222

  Fly   103 AITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDS 167
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   223 AITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDS 287

  Fly   168 EEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNT 232
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   288 EEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNT 352

  Fly   233 KFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHP 297
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   353 KFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHP 417

  Fly   298 VYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSVV 362
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||:|
  Fly   418 VYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLV 482

  Fly   363 MGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKD 427
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   483 MGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKD 547

  Fly   428 TKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSW 492
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   548 TKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSW 612

  Fly   493 TPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSDEV 543
            |||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   613 TPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSDEV 663

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic2NP_001285481.1 Dynein_IC2 23..51 CDD:288403 27/27 (100%)
NtpH 108..>178 CDD:225368 69/69 (100%)
WD40 196..512 CDD:295369 314/315 (100%)
WD40 repeat 196..245 CDD:293791 48/48 (100%)
WD40 <224..523 CDD:225201 297/298 (100%)
WD40 repeat 251..289 CDD:293791 37/37 (100%)
WD40 repeat 298..337 CDD:293791 38/38 (100%)
WD40 repeat 349..435 CDD:293791 84/85 (99%)
WD40 repeat 441..479 CDD:293791 37/37 (100%)
WD40 repeat 487..513 CDD:293791 25/25 (100%)
swNP_477075.2 Dynein_IC2 107..135 CDD:402922 27/27 (100%)
WD40 316..632 CDD:421866 314/315 (100%)
WD40 repeat 316..365 CDD:293791 48/48 (100%)
WD40 repeat 371..409 CDD:293791 37/37 (100%)
WD40 repeat 418..457 CDD:293791 38/38 (100%)
WD40 repeat 469..555 CDD:293791 84/85 (99%)
WD40 repeat 561..599 CDD:293791 37/37 (100%)
WD40 repeat 607..633 CDD:293791 25/25 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439696
Domainoid 1 1.000 911 1.000 Domainoid score I181
eggNOG 1 0.900 - - E1_KOG1587
Homologene 1 1.000 - - H37921
Inparanoid 1 1.050 624 1.000 Inparanoid score I842
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54336
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 1 1.000 - - FOG0001314
OrthoInspector 1 1.000 - - mtm6471
orthoMCL 1 0.900 - - OOG6_101571
Panther 1 1.100 - - P PTHR12442
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R314
SonicParanoid 1 1.000 - - X812
1413.840

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