DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic2 and dync1i2

DIOPT Version :9

Sequence 1:NP_001285481.1 Gene:Sdic2 / 2768883 FlyBaseID:FBgn0053497 Length:543 Species:Drosophila melanogaster
Sequence 2:XP_012825730.1 Gene:dync1i2 / 407935 XenbaseID:XB-GENE-960812 Length:655 Species:Xenopus tropicalis


Alignment Length:524 Identity:291/524 - (55%)
Similarity:379/524 - (72%) Gaps:38/524 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 PLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDAQGDDEESSLQNLGNGFTSKLPP 87
            |:.|.:..|...:..|:||:.|||:|||        .:||.|.:||::|.               
 Frog   154 PIKLGMSKVTQVDFAPRETVSYTKETQT--------PILAQDNEGDEDEE--------------- 195

  Fly    88 GYLTHGLPTVKDVAPAITPLE-----IKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVI 147
                      :.|||....::     .|||.:.:...:||:||:||.||.||.|..|...:.|::
 Frog   196 ----------ETVAPKAVAIQEEDKPEKKEEKTEAPPHELTEEEKQQIIHSEEFVSFFDHSTRIV 250

  Fly   148 ERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGS 212
            ||||||:|:|:.||.|....|:..:.::.|:||.||.|:||||||:|.::.:|||:.:|||:|.|
 Frog   251 ERALSEHVNIFFDYSGRDLEEKEGEIQAGAKLSFNRQFFDERWSKHRVVSCLDWSSQYPELLVAS 315

  Fly   213 YHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNR 277
            |:|||::|:|||||.:|||.|:||.|||.||||||||||..||:|:|||::||||||||||||||
 Frog   316 YNNNEDAPHEPDGVALVWNMKYKKMTPEYVFHCQSAVMSAAFARFHPNLVVGGTYSGQIVLWDNR 380

  Fly   278 VQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQ 342
            ..||||:||||||||||||||||:.:||||||||:||||:|||:|||||||||||||::||..:|
 Frog   381 SNKRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSLDMLSQPQDSMELVHKQ 445

  Fly   343 SKAIAITSMAFPANEINSVVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDF 407
            |||:|:|.|:||..::|:.|:|||:|.||:|.|||.::|::|::|.|.||||||..|....:.||
 Frog   446 SKAVAVTCMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHSAVGAVDF 510

  Fly   408 GHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDT 472
            .|||:|||.|||:|||:.|:.|||||||||||||.||.|||.||||||.|||.|||||||||.||
 Frog   511 SHLFVTSSFDWTVKLWTTKNNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGVGRLDLWNLNNDT 575

  Fly   473 EVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKM 537
            |||||||.|.|.||||||.||.||..:.:|:..|::::|||.|.:|.|..|||:||...|:||..
 Frog   576 EVPTASITVEGNPALNRVRWTHSGREIAVGNSEGEIFIYDVGEQIAVPRNDEWTRFARTLAEINA 640

  Fly   538 NQSD 541
            |::|
 Frog   641 NRAD 644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic2NP_001285481.1 Dynein_IC2 23..51 CDD:288403 11/27 (41%)
NtpH 108..>178 CDD:225368 28/74 (38%)
WD40 196..512 CDD:295369 213/315 (68%)
WD40 repeat 196..245 CDD:293791 29/48 (60%)
WD40 <224..523 CDD:225201 204/298 (68%)
WD40 repeat 251..289 CDD:293791 28/37 (76%)
WD40 repeat 298..337 CDD:293791 31/38 (82%)
WD40 repeat 349..435 CDD:293791 47/85 (55%)
WD40 repeat 441..479 CDD:293791 31/37 (84%)
WD40 repeat 487..513 CDD:293791 11/25 (44%)
dync1i2XP_012825730.1 Dynein_IC2 154..182 CDD:288403 12/35 (34%)
WD40 repeat 299..346 CDD:293791 27/46 (59%)
WD40 372..>616 CDD:225201 166/243 (68%)
WD40 397..>622 CDD:295369 147/224 (66%)
WD40 repeat 451..498 CDD:293791 23/46 (50%)
WD40 repeat 506..538 CDD:293791 20/31 (65%)
WD40 repeat 544..582 CDD:293791 31/37 (84%)
WD40 repeat 590..616 CDD:293791 11/25 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 376 1.000 Domainoid score I857
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H37921
Inparanoid 1 1.050 613 1.000 Inparanoid score I890
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 1 1.000 - - FOG0001314
OrthoInspector 1 1.000 - - mtm9426
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X812
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.060

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