DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic2 and CG13074

DIOPT Version :10

Sequence 1:NP_996516.1 Gene:Sdic2 / 2768883 FlyBaseID:FBgn0053497 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_648835.1 Gene:CG13074 / 39760 FlyBaseID:FBgn0036567 Length:451 Species:Drosophila melanogaster


Alignment Length:454 Identity:79/454 - (17%)
Similarity:145/454 - (31%) Gaps:154/454 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 DSEEANDERSHAR-------LSLNRVFYDER----WSKNRC-------------ITSMDWST--- 203
            |:.....|:.|..       :|...|.||||    |.:..|             :..:..|.   
  Fly    41 DAATGTQEKLHVATQTEQRVVSSKDVEYDERALAKWLRQICPMVERELMNPTPLMEDLTMSQCRL 105

  Fly   204 -------HFPELVVGSYHNNE--------ESPNEPDGVVMVWNT-------------KFKKSTPE 240
                   .:.:|::|...|::        .:.|.|   |:|..|             :.|...|:
  Fly   106 EEKLQVYTYQKLIMGGAENSQGLAIWLCVHTNNAP---VLVATTVAPHDDWCEHVDQQLKLFVPQ 167

  Fly   241 -------------DVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLW--------DNRV--QKRT 282
                         .....:|.:.|.|...||..:..|.|..|::.:|        |:.|  ::..
  Fly   168 RMSVGNLVIYTEAKTLPLKSCLRSLCTNPFNKTMFAGSTMDGELFIWLYEQARGSDSSVDIKQLY 232

  Fly   283 PIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIA 347
            .:..|..:|.|...|          ..|.:::..::|.:..|.|..    |..|:.:......::
  Fly   233 SVSSTQGAAVALDWP----------REHLLLACFANGSVRQWDLSR----QMALDWEYTLPATVS 283

  Fly   348 ITSMAFPANEINSVVMGSEDGYVYSASRHGLR-SGVNEV----YERHLGPI-TGISTHYNQLSPD 406
            ....|.....::..|:|:.||.||.....|.: :.:.::    ..||...: |.:.|...     
  Fly   284 SEPTAMVTLGLDDFVVGTNDGGVYRCWNTGRQTAAIKQIKLLALRRHRFMVSTLLRTEME----- 343

  Fly   407 FGHLFLTSS-------------IDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVD 458
             |:||:.|.             :|                 ||.:..::.:. .|....:..:.|
  Fly   344 -GNLFVLSCDLSGQAFYHDMRLVD-----------------EDMAQLIVQIP-LPFKNVIACSRD 389

  Fly   459 GS--------GRLDLWNLNQDTEVPTASIVVAGAPALNRVS----WTPSGLHVCIGDEAGKLYV 510
            |:        |.|:.:.::......... .:.|..:|.|.|    |..:||:   |||....||
  Fly   390 GNIIFCPANDGSLEYYRVSDGAHAHVKG-GLRGKGSLIRSSDNGRWLIAGLY---GDEFQIFYV 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic2NP_996516.1 Dynein_IC2 21..51 CDD:463291
WD40 196..512 CDD:475233 68/400 (17%)
WD40 repeat 196..245 CDD:293791 11/92 (12%)
WD40 repeat 251..289 CDD:293791 11/47 (23%)
WD40 repeat 298..337 CDD:293791 5/38 (13%)
WD40 repeat 349..435 CDD:293791 17/104 (16%)
WD40 repeat 441..479 CDD:293791 5/45 (11%)
WD40 repeat 487..513 CDD:293791 11/28 (39%)
CG13074NP_648835.1 None
Blue background indicates that the domain is not in the aligned region.

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