DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sdic2 and CG15701

DIOPT Version :10

Sequence 1:NP_996516.1 Gene:Sdic2 / 2768883 FlyBaseID:FBgn0053497 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_611100.1 Gene:CG15701 / 36801 FlyBaseID:FBgn0034095 Length:1051 Species:Drosophila melanogaster


Alignment Length:509 Identity:90/509 - (17%)
Similarity:163/509 - (32%) Gaps:180/509 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 STGGGNGDVLAFDAQG---DDEESSLQNLGNGFTSKLPPGY-----LTHGLPTVKDVAPAITPLE 108
            |.|..|...:|...|.   |.|..:|:.......::.||.|     |:..:....|...:..|.:
  Fly   415 SYGKLNASQVATQTQSPHMDGECQTLEVHSRSSWTQHPPHYGGQFVLSCSVDAELDETWSKQPAD 479

  Fly   109 IKKETEVKK--EVNELSEEQKQMIILS--------ENFQRFVVRAGRVIERALS----------- 152
             :.|..:.:  :::.|.:.:.|.:...        |....|:.||||::...|.           
  Fly   480 -EYEASISRLEQLHRLEQARSQQLQQKRLAKSTDLERLNSFLHRAGRLMGLVLEGKTTAHGQGNS 543

  Fly   153 -ENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNN 216
             .||.:.|..:..              |.:.|:|                         ||..|.
  Fly   544 PRNVPLQTGLLNA--------------LPVRRIF-------------------------GSAGNG 569

  Fly   217 E------ESPNEPD-------GVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYS 268
            :      |.|.:.:       .::|||:.. ..|.|..:....:.|.....:....::::.|...
  Fly   570 QLVVTVHECPADSNVYKEDFASLLMVWSLA-NPSQPLRLLSTWAEVSRVALSAQAQDIVVAGLRD 633

  Fly   269 GQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQ 333
            |.:.:||.|                .||. ||.::              ||.|..:     :..|
  Fly   634 GSVAMWDLR----------------ETHS-YCSKL--------------DGHLTHF-----AATQ 662

  Fly   334 DTLELQQRQSKAIAITSMAFPANEINSVVMGS-----------EDGYVYSASRHGLRSGVNEVYE 387
            ..:.:.::|.|            |:|::.:|:           ..|.|  |:..||::...||..
  Fly   663 SVVPMPEQQDK------------EVNAMDLGAVVDVRSFRSHLNAGGV--AATSGLQTTYKEVQY 713

  Fly   388 RHL---GPIT-------GISTHYNQLSPDFGHLFLTSSIDWTIKLW-----------SLKDTKPL 431
            ..|   |.:|       ..||:.|:.|..:..:.|..|....::.:           :.:.||.|
  Fly   714 ASLNDSGLLTMWTLVEGASSTNSNEFSSPWARVKLLQSGSCDLRSYLERRLLKSHQSAYEKTKSL 778

  Fly   432 YSFEDNSDYVM----DVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVV 481
            :.....||.|:    |.      ..|..|:.|.|...|    :.|.:.|.|.::
  Fly   779 FQGNIYSDDVLRELNDT------QTLTTALQGQGLQGL----RFTSIDTGSELI 822

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic2NP_996516.1 Dynein_IC2 21..51 CDD:463291
WD40 196..512 CDD:475233 60/335 (18%)
WD40 repeat 196..245 CDD:293791 10/61 (16%)
WD40 repeat 251..289 CDD:293791 5/37 (14%)
WD40 repeat 298..337 CDD:293791 6/38 (16%)
WD40 repeat 349..435 CDD:293791 22/117 (19%)
WD40 repeat 441..479 CDD:293791 9/41 (22%)
WD40 repeat 487..513 CDD:293791
CG15701NP_611100.1 PTZ00108 <23..270 CDD:240271
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.