DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sdic2 and Dync2i2

DIOPT Version :9

Sequence 1:NP_001285481.1 Gene:Sdic2 / 2768883 FlyBaseID:FBgn0053497 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_001005542.2 Gene:Dync2i2 / 296618 RGDID:1359465 Length:537 Species:Rattus norvegicus


Alignment Length:520 Identity:128/520 - (24%)
Similarity:216/520 - (41%) Gaps:68/520 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 GGGNGDVLAFDAQGDDEESSLQNLGNGFTSKL-----PPGYLTHGLPTVKDVAPAITPLEIKKET 113
            |.|.|:.....|...||...:.::.:.:.|..     |....|.|:.|.:..|.|.|..:.:.:|
  Rat    25 GAGGGERRGRPAPLQDETLGVASVPSQWRSVQGIRGEPKSCQTAGIATAEASAQARTHADAQVQT 89

  Fly   114 EVKKEVNELSE-EQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEAN-DERSH 176
            |..:|...::. .|...:.|:    .|:.|...::.|.|:.|...:     ..|..|.| .|:..
  Rat    90 EAPEEPAAVAPVSQYDTLRLA----AFLRRVEAMVVRELNNNWQSH-----AFDGYEVNWTEQQQ 145

  Fly   177 ARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTK---FKKST 238
            ....|:.:.|.....:...:|.:.|:|....|.......::.........|..||..   .....
  Rat   146 TVSCLHTLGYPPAQGQGLHVTGISWNTTGSVLACAYGRLDDGDWGTLKSYVCTWNLDRQGLNPHQ 210

  Fly   239 PEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVY-CLQ 302
            |..|....||||...|....|:.|.||.|||::::||....:...:.||.|:...||.||| .|.
  Rat   211 PSVVVEVPSAVMCLAFHPIQPSHIAGGLYSGEVLVWDMSRPEDPLLWRTGLTDDTHTDPVYQVLW 275

  Fly   303 MVGTQNAH--NVISISSDGKLCSW--------------SLDMLSQPQDT-LELQQRQSKAIAITS 350
            :...:::|  .|:|.::||::..|              :|.:...|:.| |:...|....:.:||
  Rat   276 LPEPRHSHRFQVLSAATDGRVLLWRGSGAGQLRLSKGFALAVQQLPRSTKLKKPPRGETEVGVTS 340

  Fly   351 MAFPANEINSVVMGSEDGYVYSASRHG-------------LRSGVNEVYERHLGPITGISTHYNQ 402
            :||.:.:.:..|:|:|.|:....|...             ||:.|...:..|.||:..:|     
  Rat   341 VAFSSFDSSLFVLGTEGGFPLKCSLAAEAAALTRMPSSVPLRAPVQFTFSPHGGPVYSVS----- 400

  Fly   403 LSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWN 467
            .||...:|||::..|..:.|:|:...:||.|.:.:..|:..|.||||.|.:|||..|.|.:.|::
  Rat   401 CSPFHRNLFLSAGTDGHVHLYSMLQAQPLTSLQLSHKYLFAVRWSPVRPLVFAAASGEGDVQLFD 465

  Fly   468 LNQDTEVPTASIVVA--GAPALNRVSWTPSGLHVCIGDEAGKLYVYDV-----------AENLAQ 519
            |.:.::.||.||...  |:|.......:.....:..||..|.:.|:.:           ||:|.|
  Rat   466 LQKSSQKPTVSITQTQDGSPVYCLEFNSQQTQLLAAGDAKGVVKVWQLSTAFTEQGPREAEDLDQ 530

  Fly   520  519
              Rat   531  530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic2NP_001285481.1 Dynein_IC2 23..51 CDD:288403
NtpH 108..>178 CDD:225368 14/71 (20%)
WD40 196..512 CDD:295369 94/351 (27%)
WD40 repeat 196..245 CDD:293791 9/51 (18%)
WD40 <224..523 CDD:225201 94/343 (27%)
WD40 repeat 251..289 CDD:293791 12/37 (32%)
WD40 repeat 298..337 CDD:293791 12/56 (21%)
WD40 repeat 349..435 CDD:293791 27/98 (28%)
WD40 repeat 441..479 CDD:293791 15/37 (41%)
WD40 repeat 487..513 CDD:293791 4/25 (16%)
Dync2i2NP_001005542.2 WD40 101..515 CDD:225201 107/427 (25%)
WD40 repeat 165..211 CDD:293791 7/45 (16%)
WD40 218..515 CDD:295369 85/301 (28%)
WD40 repeat 223..265 CDD:293791 13/41 (32%)
WD40 repeat 271..309 CDD:293791 8/37 (22%)
WD40 repeat 339..389 CDD:293791 12/49 (24%)
WD40 repeat 396..433 CDD:293791 12/41 (29%)
WD40 repeat 439..479 CDD:293791 17/39 (44%)
WD40 repeat 486..511 CDD:293791 3/24 (13%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1587
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.