DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic2 and Dync1i1

DIOPT Version :9

Sequence 1:NP_001285481.1 Gene:Sdic2 / 2768883 FlyBaseID:FBgn0053497 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_062107.2 Gene:Dync1i1 / 29564 RGDID:2512 Length:643 Species:Rattus norvegicus


Alignment Length:516 Identity:282/516 - (54%)
Similarity:362/516 - (70%) Gaps:29/516 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 LSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDAQGDDEESSLQNLGNGFTSKLPPGYL 90
            |.|..|...:..|:|.:.|:|:|||        .:....::.|:|:..:.....|..|:|..   
  Rat   146 LGVSKVTQVDFLPREVVSYSKETQT--------PLATHQSEEDEEDEEMVEPKVGHDSELEN--- 199

  Fly    91 THGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENV 155
                             :.||:...:....||:||:||.|:.||.|..|..|..|||||||:|:.
  Rat   200 -----------------QDKKQETKEAPPRELTEEEKQQILHSEEFLIFFDRTIRVIERALAEDS 247

  Fly   156 DIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESP 220
            ||:.||.|....|:..|.::.|.||.||.||||.|||:|.:|.||||..:|||:|.||.|||::|
  Rat   248 DIFFDYSGRELEEKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYSNNEDAP 312

  Fly   221 NEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQ 285
            :|||||.:|||.||||:|||.||||||:|||.|||:|:|||::||||||||||||||..:|||:|
  Rat   313 HEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARFHPNLVVGGTYSGQIVLWDNRSHRRTPVQ 377

  Fly   286 RTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITS 350
            |||||||||||||||:.:||||||||:|::|:|||:|||||||||.||:::||...:||.:|:|.
  Rat   378 RTPLSAAAHTHPVYCVNVVGTQNAHNLITVSTDGKMCSWSLDMLSTPQESMELVYNKSKPVAVTG 442

  Fly   351 MAFPANEINSVVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSS 415
            ||||..::|:.|:|||:|.||:|.|||.::|:.||:|.|.||:|||:.|......||.|||:|||
  Rat   443 MAFPTGDVNNFVVGSEEGTVYTACRHGSKAGIGEVFEGHQGPVTGINCHMAVGPIDFSHLFVTSS 507

  Fly   416 IDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIV 480
            .|||:|||:.|..|||||||||:|||.||.||||||||||.|||.|||||||||.||||||||:.
  Rat   508 FDWTVKLWTTKHNKPLYSFEDNADYVYDVMWSPVHPALFACVDGMGRLDLWNLNSDTEVPTASVA 572

  Fly   481 VAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSD 541
            :.||.|||||.|...|..|.:||..|::::|||.| ||.|..|||:||...|.||:.|::|
  Rat   573 IEGASALNRVRWAQGGKEVAVGDSEGRIWIYDVGE-LAVPHNDEWTRFARTLVEIRANRAD 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic2NP_001285481.1 Dynein_IC2 23..51 CDD:288403 9/24 (38%)
NtpH 108..>178 CDD:225368 29/69 (42%)
WD40 196..512 CDD:295369 208/315 (66%)
WD40 repeat 196..245 CDD:293791 32/48 (67%)
WD40 <224..523 CDD:225201 198/298 (66%)
WD40 repeat 251..289 CDD:293791 28/37 (76%)
WD40 repeat 298..337 CDD:293791 27/38 (71%)
WD40 repeat 349..435 CDD:293791 48/85 (56%)
WD40 repeat 441..479 CDD:293791 32/37 (86%)
WD40 repeat 487..513 CDD:293791 11/25 (44%)
Dync1i1NP_062107.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..65
Interaction with DCTN1 2..123
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 96..123
Dynein_IC2 145..171 CDD:402922 10/32 (31%)
Interaction with DYNLT1. /evidence=ECO:0000250|UniProtKB:O14576 145..161 4/14 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 167..219 14/79 (18%)
WD40 281..604 CDD:421866 212/322 (66%)
WD 1 283..332 31/48 (65%)
WD40 repeat 289..335 CDD:293791 30/45 (67%)
WD 2 336..376 30/39 (77%)
WD40 repeat 344..383 CDD:293791 29/38 (76%)
WD 3 385..426 31/40 (78%)
WD40 repeat 391..432 CDD:293791 28/40 (70%)
WD 4 435..475 21/39 (54%)
WD40 repeat 440..479 CDD:293791 20/38 (53%)
WD 5 480..525 25/44 (57%)
WD40 repeat 486..527 CDD:293791 24/40 (60%)
WD 6 528..568 33/39 (85%)
WD40 repeat 533..571 CDD:293791 32/37 (86%)
WD 7 574..613 20/39 (51%)
WD40 repeat 579..605 CDD:293791 11/25 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166334324
Domainoid 1 1.000 378 1.000 Domainoid score I818
eggNOG 1 0.900 - - E1_KOG1587
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 618 1.000 Inparanoid score I852
OMA 1 1.010 - - QHG54336
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 1 1.000 - - FOG0001314
OrthoInspector 1 1.000 - - mtm9006
orthoMCL 1 0.900 - - OOG6_101571
Panther 1 1.100 - - O PTHR12442
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X812
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.770

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