DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic2 and Sdic4

DIOPT Version :9

Sequence 1:NP_001285481.1 Gene:Sdic2 / 2768883 FlyBaseID:FBgn0053497 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_001368966.1 Gene:Sdic4 / 2768886 FlyBaseID:FBgn0053499 Length:554 Species:Drosophila melanogaster


Alignment Length:558 Identity:534/558 - (95%)
Similarity:537/558 - (96%) Gaps:19/558 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGLVLIKFLRSTYSTLSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDA 65
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly     1 MGLVLIKFLRSTYSTLSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDA 65

  Fly    66 QGDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMI 130
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly    66 QGDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMI 130

  Fly   131 ILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRC 195
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   131 ILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRC 195

  Fly   196 ITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPN 260
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   196 ITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPN 260

  Fly   261 LILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWS 325
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   261 LILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWS 325

  Fly   326 LDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSVVMGSEDGYVYSASRHGLRSGVNEVYERHL 390
            |||||||||||||||||||||||||||||||||||:|||||||||||||||||||||||||||||
  Fly   326 LDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHL 390

  Fly   391 GPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLK---------------DTKPLYSFEDNSDY 440
            |||||||||||||||||||||||||    ||:||||               ..||||||||||||
  Fly   391 GPITGISTHYNQLSPDFGHLFLTSS----IKIWSLKLPISSCQFSVVSGINSNKPLYSFEDNSDY 451

  Fly   441 VMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEA 505
            :||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   452 MMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEA 516

  Fly   506 GKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSDEV 543
            ||||||||||||||||||||||||||||||||||||||
  Fly   517 GKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSDEV 554

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic2NP_001285481.1 Dynein_IC2 23..51 CDD:288403 27/27 (100%)
NtpH 108..>178 CDD:225368 69/69 (100%)
WD40 196..512 CDD:295369 306/330 (93%)
WD40 repeat 196..245 CDD:293791 48/48 (100%)
WD40 <224..523 CDD:225201 289/313 (92%)
WD40 repeat 251..289 CDD:293791 37/37 (100%)
WD40 repeat 298..337 CDD:293791 38/38 (100%)
WD40 repeat 349..435 CDD:293791 77/100 (77%)
WD40 repeat 441..479 CDD:293791 36/37 (97%)
WD40 repeat 487..513 CDD:293791 25/25 (100%)
Sdic4NP_001368966.1 Dynein_IC2 23..51 CDD:402922 27/27 (100%)
WD40 196..523 CDD:421866 306/330 (93%)
WD40 repeat 196..245 CDD:293791 48/48 (100%)
WD40 repeat 251..289 CDD:293791 37/37 (100%)
WD40 repeat 298..337 CDD:293791 38/38 (100%)
WD40 repeat 349..446 CDD:293791 77/100 (77%)
WD40 repeat 452..490 CDD:293791 36/37 (97%)
WD40 repeat 498..524 CDD:293791 25/25 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439691
Domainoid 1 1.000 911 1.000 Domainoid score I181
eggNOG 00.000 Not matched by this tool.
Homologene 1 1.000 - - H37921
Inparanoid 1 1.050 624 1.000 Inparanoid score I842
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54336
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 1 1.000 - - FOG0001314
OrthoInspector 1 1.000 - - mtm6471
orthoMCL 1 0.900 - - OOG6_101571
Panther 1 1.100 - - P PTHR12442
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X812
1211.910

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