DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic2 and Dnai3

DIOPT Version :9

Sequence 1:NP_001285481.1 Gene:Sdic2 / 2768883 FlyBaseID:FBgn0053497 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_766452.2 Gene:Dnai3 / 242253 MGIID:3045269 Length:923 Species:Mus musculus


Alignment Length:724 Identity:132/724 - (18%)
Similarity:225/724 - (31%) Gaps:275/724 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 LAFDAQGDDEESSLQNLGNGFTSKL---------PPGYLTHGLPTVKDVAPAITPLEIKKET--E 114
            ::..::.:.||.|:|..|...|..:         |..:......:|||.....|....|..|  :
Mouse   164 VSLGSEKEIEEESVQESGKRVTYMISRKRSEFGAPVTFSDQNASSVKDAYIECTSYPEKNYTLSQ 228

  Fly   115 VKKEV-----------------------------NELSEEQKQMIILSENFQRFVVRAGRVIERA 150
            |:|:|                             .|.|||:|.:|..|::...|.......:|.|
Mouse   229 VEKDVGLQVIAEVKDTSTQTKWAFPKNATTQYYPREFSEEEKSLIGKSKSLVDFFNNVSTSVEVA 293

  Fly   151 LSENVDIYT---DYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDW-STHFPELVVG 211
            |.:|..:.|   |:....:.|....:::...|...:.|.|...:..:.||.:.| .|.|..:||.
Mouse   294 LQQNEIMNTFIDDWKNLAEEESTFGDKTDTHLKEYQSFTDLHNTMEKMITCVSWHPTIFGLIVVS 358

  Fly   212 -----SYHNNEESPN----EPDGVVMVW------NTKFKKSTPEDVFHCQSAVMSTC--FAKFNP 259
                 ||....::..    :| .:::.|      :.:....:|:|:|         |  |...:|
Mouse   359 VAVRLSYEERVQNSGRLLLQP-SLLLFWSFSDPIHPQLMLESPDDIF---------CFEFCPSDP 413

  Fly   260 NLILGGTYSGQIVLWD-----NRVQ---------KRTPIQRTPLSAAAHTHPVYCLQ-------- 302
            |:|.||..:|||||||     :|::         |:|.::           |::.|:        
Mouse   414 NIIAGGCINGQIVLWDITAHADRIENIKTGGHRSKKTSLK-----------PMFLLEPDSNKESM 467

  Fly   303 ------MVGTQNAH-------------------------------NVISISSDGKLCSW------ 324
                  :...:|.|                               .:::.|:|..:|.|      
Mouse   468 YIRHCAVSSIENGHRKVITDIHWLPDSFEINRMGSVFENRSGINCQLVTCSADCTICFWDIRPQK 532

  Fly   325 ----------------------------------------------------------------S 325
                                                                            |
Mouse   533 PAVTAAAAASAATTATNNANSQQSPVEKKKEENIDIPFDVPSTFLHLDLSWKPLSRLKLSKGDTS 597

  Fly   326 LD------------------------------MLSQPQ--DTLELQQRQSKAIAITSMAFPANEI 358
            ||                              ||||.:  .|.|:...|:....|.::..|..:.
Mouse   598 LDHCPTKLSLGEDPFLCKIQGTSSIHIILRDKMLSQIKMVKTSEINPYQNLEAGIANILKPIEDF 662

  Fly   359 -NSVVMGSEDGYVY----------SASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFL 412
             ....:|:|:|.|.          ...|...:..|: :|..|.|.:     |..|.||.|..:.|
Mouse   663 CTKFFVGTEEGEVIYTDWKMERDSDTGRLMAKKPVS-LYTVHDGAV-----HTIQRSPFFNDIVL 721

  Fly   413 TSSIDWTIKLWSLKD---TKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEV 474
            |.. .|.:.:|  |:   |.||..............||...|.:|......|.:|:|:|.:.|..
Mouse   722 TVG-GWNVAIW--KEEVMTGPLLQTCCGPKRYTAGHWSLTRPGVFYIGREDGNVDIWDLLEKTHE 783

  Fly   475 PTASIVVAGAPALNRVSWTPSGLH--VCIGDEAGKLYVYDVAENLAQPSRDEWSRFN-------T 530
            |..|..:..........||.|...  :.:.|..|.|::.::...|:.||.:|.|..|       .
Mouse   784 PAQSQNICITMITYIKPWTFSSKQQFIAVADYYGTLHILEIPWTLSHPSLNEVSSVNYYFEREVR 848

  Fly   531 HLSEIKMNQ 539
            ||..::..:
Mouse   849 HLEYVQQRK 857

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic2NP_001285481.1 Dynein_IC2 23..51 CDD:288403
NtpH 108..>178 CDD:225368 20/103 (19%)
WD40 196..512 CDD:295369 90/510 (18%)
WD40 repeat 196..245 CDD:293791 14/64 (22%)
WD40 <224..523 CDD:225201 83/483 (17%)
WD40 repeat 251..289 CDD:293791 17/53 (32%)
WD40 repeat 298..337 CDD:293791 15/185 (8%)
WD40 repeat 349..435 CDD:293791 23/99 (23%)
WD40 repeat 441..479 CDD:293791 10/37 (27%)
WD40 repeat 487..513 CDD:293791 6/27 (22%)
Dnai3NP_766452.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..35
WD40 <384..>532 CDD:225201 29/167 (17%)
WD 1. /evidence=ECO:0000255 398..438 18/48 (38%)
WD 2. /evidence=ECO:0000255 480..536 5/55 (9%)
WD 3. /evidence=ECO:0000255 702..741 14/46 (30%)
WD 4. /evidence=ECO:0000255 745..785 9/39 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1587
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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