DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic2 and Dync2i1

DIOPT Version :10

Sequence 1:NP_996516.1 Gene:Sdic2 / 2768883 FlyBaseID:FBgn0053497 Length:543 Species:Drosophila melanogaster
Sequence 2:XP_006515843.1 Gene:Dync2i1 / 217935 MGIID:2445085 Length:1033 Species:Mus musculus


Alignment Length:620 Identity:127/620 - (20%)
Similarity:219/620 - (35%) Gaps:164/620 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 TYSTLSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDAQGDDEESS--- 73
            |:|.|.   ..|:|  .|::...|...|.    |||.....    |.|.:..|.|.:|.|:.   
Mouse   481 TFSLLD---LPPVN--EYDMYIRNFGKKN----TKQAYVQY----NEDNVERDIQTEDIETREVW 532

  Fly    74 LQNLGNGFTSKLPPGYLTHGLPTVKD-----VAPAI-TPLEIKKETEVKKEVNELSEEQKQMIIL 132
            .|:.|.|..        ..|....||     |.|.| ||                          
Mouse   533 TQHPGEGTA--------VSGGSEEKDFSDVTVVPKIDTP-------------------------- 563

  Fly   133 SENFQRFVVRAGRVIERALSENVDIYTDYIGGGDS-------EEANDERSHARLSLNRVFYDERW 190
              ....|:..|.:|:...|.|      |.:..|.|       :..|...|.::|:.:..|...| 
Mouse   564 --RLANFLRAACQVVAVLLEE------DRLAAGPSWIPRAQDKALNISDSSSQLNTSLPFLQSR- 619

  Fly   191 SKNRCITSMDWSTHFPELVVGSYHNNEESPNEPD----GVVMVWNTKFKKSTPEDVFHCQSAVMS 251
             |..|:    .::......|.|.|:..|....|.    .::.||:. ::.|.|:.|..|:|.|..
Mouse   620 -KVSCL----HASRVQRQTVVSVHDLPEKAFAPSLDSRHLLCVWDI-WQPSGPQKVLICESKVTC 678

  Fly   252 TCFAKFNPNLILGGTYSGQIVLWDNR-------------------------------VQKRTPIQ 285
            .||:.....|:..||..|.:|:||.|                               |..|:|:|
Mouse   679 CCFSPLKAFLLFAGTVHGSVVVWDLREDSRIHHYVRLSNCFWAFRTPTFSTDGILTSVNHRSPLQ 743

  Fly   286 R-TPLSAAAHTHPVYCLQMVGTQN-----AHNVISISSDGKLCSW------SLDMLSQPQD---- 334
            . .|::.:|:....:.|....||.     :.::.|:...|.|..|      ..|:.....|    
Mouse   744 AIEPVATSAYKKQSFVLSPFSTQEEMAGLSFHIASLDETGVLNVWVVVELPKADISGSMSDLGLI 808

  Fly   335 ----------TL-----ELQQRQSKAIAIT---SMAFPANEINSVVMGSEDGYVYSASRHGLRSG 381
                      |:     .|..:.|:....|   |:.|..::.|..|:|::.|.:..::|...|..
Mouse   809 PGGRIKLVHSTVIQLGNSLSHKDSELWGSTQTLSVKFLPSDPNHFVVGTDMGLISHSTRQDWRVS 873

  Fly   382 VNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSD--YVMDV 444
             ..|::.....:..|..:....||....:||....|.:|:|..|...:|:..:::::.  .|..:
Mouse   874 -PRVFKPEQHGVRPIKVNVIDFSPFEETVFLAGCSDGSIRLHQLTSERPIMQWDNSTSGHAVTSL 937

  Fly   445 AWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTA----------SIVVAGAPALNRVSWTPSGLHV 499
            .|||..||:|...|.:.|:.:|:|.::...|.|          ::.:.|.|.....|:    :.:
Mouse   938 QWSPTRPAVFLVQDDASRIYVWDLLENDLGPVAQQPISPDKLVAMTIVGEPEKTSGSF----VAL 998

  Fly   500 CIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSE 534
            .:...:|.:.|.::......|:.||.|:....|.:
Mouse   999 VLARTSGTVDVQNLKRRWTTPAVDEHSQLRLLLQK 1033

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic2NP_996516.1 Dynein_IC2 21..51 CDD:463291 8/29 (28%)
WD40 196..512 CDD:475233 79/396 (20%)
WD40 repeat 196..245 CDD:293791 10/52 (19%)
WD40 repeat 251..289 CDD:293791 14/69 (20%)
WD40 repeat 298..337 CDD:293791 10/68 (15%)
WD40 repeat 349..435 CDD:293791 20/88 (23%)
WD40 repeat 441..479 CDD:293791 13/47 (28%)
WD40 repeat 487..513 CDD:293791 3/25 (12%)
Dync2i1XP_006515843.1 PTZ00121 <48..396 CDD:173412
WD40 repeat 635..671 CDD:293791 9/36 (25%)
WD40 673..961 CDD:475233 60/288 (21%)
WD40 repeat 676..708 CDD:293791 11/31 (35%)
WD40 repeat 715..752 CDD:293791 5/36 (14%)
WD40 repeat 759..788 CDD:293791 6/28 (21%)
WD40 repeat 842..878 CDD:293791 9/36 (25%)
WD40 repeat 890..926 CDD:293791 9/35 (26%)
Blue background indicates that the domain is not in the aligned region.

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