DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sdic2 and dnai3

DIOPT Version :9

Sequence 1:NP_001285481.1 Gene:Sdic2 / 2768883 FlyBaseID:FBgn0053497 Length:543 Species:Drosophila melanogaster
Sequence 2:XP_017209145.2 Gene:dnai3 / 100333131 ZFINID:ZDB-GENE-121116-5 Length:968 Species:Danio rerio


Alignment Length:578 Identity:121/578 - (20%)
Similarity:198/578 - (34%) Gaps:189/578 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 TVKDVAPAITPLEIKKETEV--KKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENV--D 156
            |.:|.....|....||...:  :.|..|.|.|:||..:.|||.:.|:....|..|..|.:|:  |
Zfish   246 TCRDNTHTCTQTLWKKPKNMWSQYEPREFSSEEKQHQLQSENLKNFITSVARRFEIYLQQNLIAD 310

  Fly   157 IY-TDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNN---E 217
            :: .|:....:.:.:...::..:|...:.|.|..:||.:.|:.:.|......::|.|....   |
Zfish   311 VFCDDWTALCEDDASLMGKTETQLKEYQSFMDLHFSKEKTISHVQWHPSISGVIVVSMMERLSLE 375

  Fly   218 E----------SPNEPDGVVMVW------NTKFKKSTPEDVFHCQSAVMSTCFAKFNP---NLIL 263
            |          :|:.    ::.|      |.:.:...|:||.         || :|:|   |:|.
Zfish   376 ERIDSSTKLLLNPSH----ILFWSFSDPINPQLQLECPDDVL---------CF-QFSPSDHNIIA 426

  Fly   264 GGTYSGQIVLWD-------------------NRVQK--RTPIQRTPLSAAAHTHPVYCLQMVGTQ 307
            ||..:||:||||                   |::.|  .||:.|            || .:.|.:
Zfish   427 GGCMNGQVVLWDISAHVDRLQDTRSGGKNILNKLGKSDATPVVR------------YC-AVSGIE 478

  Fly   308 NAH-------------------------------NVISISSDGKLCSW----------SLDMLSQ 331
            |.|                               .:::.:.|..:..|          ||..:.|
Zfish   479 NGHKAPITDIQWLPETFEVNKLGTPVENQSRTSVQLVTCAPDCCVLFWDLRAPRVMVHSLTDIKQ 543

  Fly   332 PQDTLELQQRQS-----KAIAITSMAFPANEINSVVMGSEDGYVYSASRHGLR------------ 379
            .|:...|:....     ..:.:|...|....:..:....|    ||..|..:|            
Zfish   544 KQEEKPLENPHGVPNTFTHLNLTWKPFIRVSLPKISSSGE----YSPLRFSMRENTVDYNTGDKS 604

  Fly   380 -SGV-NEVY-------ERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKD-------- 427
             ||. :.|:       .:...|:..|||.. .::.:.|.|..|   ||.::    ||        
Zfish   605 VSGADSRVFAQLRMQSAKQQKPLQNISTKL-YIATEDGELVYT---DWKVE----KDNDSGRMLS 661

  Fly   428 TKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQD-----TEVPTASIVVAGAPAL 487
            .|||..|......:..|:.||....:...| |.....:|.....     ..|.:.|:..||    
Zfish   662 AKPLDVFLLQDTLLHTVSRSPFFRDIILTV-GRFSFSIWREGLTCGPLLMSVYSKSMFSAG---- 721

  Fly   488 NRVSWTPSGLHVC-IGDEAGKLYVYDVAENLAQPS-------------RDEWSRFNTH 531
               .|:.|...|. :|.|.|.:.|:|:.:|..|||             |.:.|..|||
Zfish   722 ---HWSRSRPAVLFMGREDGDVEVWDLLQNSRQPSHTQNISTAAISCIRTQTSSGNTH 776

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic2NP_001285481.1 Dynein_IC2 23..51 CDD:288403
NtpH 108..>178 CDD:225368 18/74 (24%)
WD40 196..512 CDD:295369 85/439 (19%)
WD40 repeat 196..245 CDD:293791 12/67 (18%)
WD40 <224..523 CDD:225201 83/422 (20%)
WD40 repeat 251..289 CDD:293791 19/61 (31%)
WD40 repeat 298..337 CDD:293791 11/79 (14%)
WD40 repeat 349..435 CDD:293791 24/114 (21%)
WD40 repeat 441..479 CDD:293791 7/42 (17%)
WD40 repeat 487..513 CDD:293791 7/26 (27%)
dnai3XP_017209145.2 WD40 <348..>533 CDD:225201 38/211 (18%)
SbcC <835..>953 CDD:223496
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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