DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment par-1 and Lkb1

DIOPT Version :9

Sequence 1:NP_995894.2 Gene:par-1 / 2768852 FlyBaseID:FBgn0260934 Length:1170 Species:Drosophila melanogaster
Sequence 2:NP_001163606.1 Gene:Lkb1 / 41673 FlyBaseID:FBgn0038167 Length:567 Species:Drosophila melanogaster


Alignment Length:614 Identity:160/614 - (26%)
Similarity:245/614 - (39%) Gaps:147/614 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 ASGAAATGGVGSVSQGPATVSASAANTNHSHQHSH-------QH--------------------- 161
            |:|.|..||.|:..|...|...:.....| |.|.|       ||                     
  Fly    13 AAGGAEAGGAGATGQMTVTTMEAQVKAAH-HHHLHHPTGGGAQHKVEEEEPDPVEDEMTVLLANK 76

  Fly   162 --HHHVANNMTTDGARLSSNNSAVVASSAINHHHHHTPGSGVAPTVNKNVLSTHSAHPSA----- 219
              |:.||::: .|.|.:........|..|         |:||.......:|.....||..     
  Fly    77 NFHYDVASDL-DDDAFVELKEDTAQADDA---------GAGVGFYNPDELLLDDQPHPQVTWLDD 131

  Fly   220 ----IKQRTSSAKGSPNM-------------QMRSSAPMRWRATEEHIGKYKLIKTIGKGNFAKV 267
                ...|.:...|  ||             |.:.|..|        :|||.:...:|:|::.||
  Fly   132 DEIETLDRVTLDMG--NMFFNRVDSQDIIYQQKKKSIKM--------VGKYIMGDVLGEGSYGKV 186

  Fly   268 KLAKHLPTGKEVAIKIIDKTQLN--PGSLQKLFREVRIMKMLDHPNIVKLFQVI--ETEKTLYLI 328
            |.|.:......:|:||:.|.:|.  |...|.:.||:.::|.|.|.::|:|..|:  |.::.:||:
  Fly   187 KEAMNSENLCRLAVKILTKRKLRRIPNGEQNVTREIALLKQLKHRHVVELVDVLYNEEKQKMYLV 251

  Fly   329 MEYASGG--EVFDYLVLHGRMKEKEARVKFRQIVSAVQYCHQKRIIHRDLKAENLLLDSELNIKI 391
            |||..||  |:.||.. ..||...:|...|:|:|..::|.|..|:||:|:|..||||..:..:||
  Fly   252 MEYCVGGLQEMIDYQP-DKRMPLFQAHGYFKQLVDGLEYLHSCRVIHKDIKPGNLLLSLDQTLKI 315

  Fly   392 ADFGFSNE---FTPGSKLDTFCGSPPYAAPELFQG-KKYDGPEVDVWSLGVILYTLVSGSLPFDG 452
            :|||.:.:   |.|.....|..|||.:..||:..| :.:.|.:||:||.||.||.|.:|..||:|
  Fly   316 SDFGVAEQLDLFAPDDTCTTGQGSPAFQPPEIANGHETFAGFKVDIWSSGVTLYNLATGQYPFEG 380

  Fly   453 STLRELRERVLRGKYRIP---FYMSTDCENLLRKFLVLNPAKRASLETIMGDKWMNMGFEEDELK 514
            ..:..|.|.:.||::..|   :.|..|..||:...|..:|:||.||:.|..|.|    |....:|
  Fly   381 DNIYRLLENIGRGQWEAPAWLYEMDADFANLILGMLQADPSKRLSLQEIRHDTW----FRSAPVK 441

  Fly   515 PYIEPKADLADPKRIEALVAMGYNRSEIEASLSQVRY----DDVFATYLLLGRKSTDPESDGSRS 575
                    ...|..|..|....|..|.:...|....|    :||:.|       ..|...:.:|.
  Fly   442 --------TGPPIPIPPLKGDKYRNSTVIPYLEAYHYGTQEEDVYFT-------EHDVNQELARQ 491

  Fly   576 GSSLSLRNISGNDAGANAGSASVQSPTHRGVHRSISASSTKPSRRASSGVGPTNAAATVAAATGA 640
            .::.:....:...|.|.|...:.:.|                             :.:.|||:.:
  Fly   492 AAAAASEIRAKQSAAALAACHTYEPP-----------------------------STSAAAASNS 527

  Fly   641 VGAVNPSNNYNAAGSAADRASVGSNFKRQ 669
            :|        |.:...|.....||..||:
  Fly   528 LG--------NGSREEAPVKKKGSALKRR 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
par-1NP_995894.2 STKc_MARK 252..504 CDD:270974 96/264 (36%)
S_TKc 253..504 CDD:214567 95/263 (36%)
UBA_MARK_Par1 525..563 CDD:270522 10/41 (24%)
MARK1-3_C 839..936 CDD:213381
Lkb1NP_001163606.1 S_TKc 172..435 CDD:214567 96/267 (36%)
STKc_LKB1 178..435 CDD:271021 95/261 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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