DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fs and fst

DIOPT Version :9

Sequence 1:NP_652376.2 Gene:Fs / 2768836 FlyBaseID:FBgn0259878 Length:767 Species:Drosophila melanogaster
Sequence 2:XP_012815813.1 Gene:fst / 493419 XenbaseID:XB-GENE-486296 Length:342 Species:Xenopus tropicalis


Alignment Length:582 Identity:121/582 - (20%)
Similarity:175/582 - (30%) Gaps:277/582 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly   192 QPLMALLIGLLLLNF---RLAAAGTCWQTHLGSGKCGQVFSTDISRSECCGSSQ-SFSYTDREL- 251
            ||.|..|:.:.|.:|   |...||.||.....:|:|..::.|::|:.|||.:.: ..|:|:.:: 
 Frog     7 QPGMIFLLTVSLCHFMEHRAVQAGNCWLQQSKNGRCQVLYRTELSKEECCKTGRLGTSWTEEDVP 71

  Fly   252 SSVEYFFATAIGGGVECSPCMESCKGFKCGPNKKC-VKRKGRPKCVCAPECGAALRRRTHQQELE 315
            :|..:.:....||...|.||.|:|:...|||.||| :.:|.:|:|||||:|              
 Frog    72 NSTLFKWMIFHGGAPHCVPCKETCENVDCGPGKKCKMNKKNKPRCVCAPDC-------------- 122

  Fly   316 LEQEPELEEEQQEMKPPRESRSLSSENTNFNLGLDGGQRQRADNQRKLQPRESKHRRLLIIDSSS 380
                                                                             
 Frog   123 ----------------------------------------------------------------- 122

  Fly   381 RSSSNLPDQPTSGRRGRVEMTGYERRRHRNNHGKHLTRSMTTGANDSFPADKTPAQSPAADSILA 445
                                                                             
 Frog   123 ----------------------------------------------------------------- 122

  Fly   446 QSRLANLANANEPANDINRQSSTRVRHQHARRIEHAPNPDNGLRKRQHKQQQQHQHQHQDRMNTE 510
                                                                             
 Frog   123 ----------------------------------------------------------------- 122

  Fly   511 AQSANTTVSGSGSGATNHRRISQLQHGSETAASSDLANTHDLAHLGGIYAPLPPQHSNPVCGTDG 575
               :|.|..||                                                |||.||
 Frog   123 ---SNITWKGS------------------------------------------------VCGIDG 136

  Fly   576 RTYNTECQLRKRACRTNNAQLEVAYRGHCKNSCSGVHCLNGLTCVEDQYLMPHCIACRIECPWDN 640
            :||..||.|.|..|: ...:|:|.|:|.||.:|..|.|....|||.||....:|:.|...|| :.
 Frog   137 KTYKDECALLKAKCK-GVPELDVQYQGKCKKTCRDVLCPGSSTCVVDQTNNAYCVTCNRICP-EP 199

  Fly   641 LDVDSSGYDERQAVCGVDGKTYRSACDINRMICKIGRSIAVAYPGPCRAGRVSCADIKCGPKDNC 705
            :..|       |.:||.||.||.|||.:.:..|.:||||.:||.|.|...: ||.||:|.....|
 Frog   200 VSPD-------QYLCGNDGITYASACHLRKATCLLGRSIGLAYEGKCIKAK-SCEDIQCSAGKKC 256

  Fly   706 LVDLQTRQPRCVTCRYKCPRKQQRPVHKICGYNNQTYNSWCEMHKHSCESRYFIGVKSQGSC 767
            |.|.:..:.||..|...| ..:.:....:|..:|.||.|.|.|.:.:|.:...:.||..|||
 Frog   257 LWDSRVGRGRCALCDDVC-GAESKSDDTVCASDNTTYPSECAMKQAACSTGVLLEVKHSGSC 317

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FsNP_652376.2 KAZAL 564..604 CDD:197624 16/39 (41%)
KAZAL_FS 654..687 CDD:238052 17/32 (53%)
KAZAL_FS 723..767 CDD:238052 12/43 (28%)
fstXP_012815813.1 KAZAL 117..164 CDD:197624 25/307 (8%)
FOLN 167..190 CDD:128570 8/22 (36%)
KAZAL 192..239 CDD:197624 22/54 (41%)
KAZAL 270..317 CDD:197624 13/47 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I11945
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 221 1.000 Inparanoid score I3456
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1460520at2759
OrthoFinder 1 1.000 - - FOG0003390
OrthoInspector 1 1.000 - - otm49506
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5159
SonicParanoid 1 1.000 - - X2287
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.090

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