DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG33228 and CG4806

DIOPT Version :10

Sequence 1:NP_995940.2 Gene:CG33228 / 2768732 FlyBaseID:FBgn0261373 Length:215 Species:Drosophila melanogaster
Sequence 2:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster


Alignment Length:220 Identity:39/220 - (17%)
Similarity:73/220 - (33%) Gaps:64/220 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   259 LEDLEDDDDEDL--------KRILHRSQSVDEKLAALVANENLRTHSSNSLTTTPTTTNPTSNDE 315
            |:.:.||..|..        |.:...|:::|.....||....|....:.|......:|....:|.
  Fly    43 LQKVYDDCQETADFTECLKQKAVTSISRAIDSDSIQLVDGVTLVKQKNVSADENSESTILGLSDA 107

  Fly   316 RRSRSLHKLSPRKTPSANSSAELLRDVD--LETDPVAVSSASPPVSDGPENLCMKKSSSSNGTAR 378
            |....|          ..:...|::.:|  |:|..::..                 .|.:.|:..
  Fly   108 RSMEGL----------GETDKALVQKIDKFLKTHTISFD-----------------LSEARGSGN 145

  Fly   379 MSDGSK---ESSSLSDGISGQLSKR--GLLSLKDIRHLNRAALNRSLGSISPPPSLSSLSNNLHP 438
            ..:||:   .:...:.||:|.:..:  |.::.|.: .:::.||  ::.||.              
  Fly   146 KKNGSRYVIAALLTAMGIAGPIGLKTLGAIAFKAL-VISKVAL--TIASIM-------------- 193

  Fly   439 ALSLMHHHHHHHH-----HHGESKR 458
            ||..:....||..     |.|...|
  Fly   194 ALKKIFKADHHEETSFQVHTGHDNR 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG33228NP_995940.2 None
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848 14/84 (17%)
RRM3_Nop4p 229..312 CDD:410077
RRM4_RBM28_like 379..468 CDD:409850
PTZ00121 <473..>622 CDD:173412
Blue background indicates that the domain is not in the aligned region.

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