DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment luna and Klf4

DIOPT Version :9

Sequence 1:NP_001260879.1 Gene:luna / 2768719 FlyBaseID:FBgn0040765 Length:570 Species:Drosophila melanogaster
Sequence 2:NP_446165.1 Gene:Klf4 / 114505 RGDID:621445 Length:482 Species:Rattus norvegicus


Alignment Length:570 Identity:152/570 - (26%)
Similarity:227/570 - (39%) Gaps:177/570 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 RDEPKLQKKMHSNLDNPWDIFSTPARLLEELKIKEQHLDTISTTSSVSSNCSGTSWDSNGSQALS 108
            |:|....|::......|:|:.:|.|..||                   |..:|.:..||.     
  Rat    45 REELSHMKRLPPLPGRPYDLAATVATDLE-------------------SGGAGAACSSNN----- 85

  Fly   109 CSVLVKQERIDEEDDDVGCDDKLSVLLAAPPSAISPNPSIGSAGNMTPTSISNSSSISSSNSHSN 173
             ..|.::| .:|.:|.:..|..||       :::|...|:.:       :::.|:|.|||:|.::
  Rat    86 -PALPRRE-TEEFNDLLDLDFILS-------NSLSHQESVAA-------TVTTSASASSSSSPAS 134

  Fly   174 SNGNTTGSSNIIASPLSSLGSGSTITVSSRNSSAPGIKVRVVQAKNHPGSNARMHLGHVQDFVLP 238
            |...:..|:...:.|:.:.|.             ||:      |..:.|....        :...
  Rat   135 SGPASAPSTCSFSYPIRAGGD-------------PGV------AAGNTGGGLL--------YSRE 172

  Fly   239 TLTPPSSPESNLRSHNYAQQLEANDLAALIQQQQQQQQQQQQQQQQQQLNPQPGNSTPATAILRF 303
            :..||::|      .|.|   :.||                       ::|..|.   ...:|| 
  Rat   173 SAPPPTAP------FNLA---DIND-----------------------VSPSGGF---VAELLR- 201

  Fly   304 TSQSNPTMTQLQQQQQQLAVQHLSISPQALGHSNIGSNSPKSSSSSSSNSSNSSSSSHSSSSSIS 368
                 |.:..:....||         ||..|...:|....|:|.|       :..|.::|.|.||
  Rat   202 -----PELDPVYIPPQQ---------PQPPGGGLMGKFVLKASLS-------TPGSEYTSPSVIS 245

  Fly   369 GSSDQPTHSNIPRSTIVRLTTANGKPGAAGISLARVIQMQNNGNANVAAVLSAAANSGSSNSNSN 433
            .|...|..|:    .:|....:.|.|     .:...|:.:...:..|:..|.|..::|...||.:
  Rat   246 VSKGSPDGSH----PVVVAPYSGGPP-----RMCPKIKQEAVPSCTVSRSLEAHLSAGPQLSNGH 301

  Fly   434 SSSSN-------TSSNSINTATPQQ-------------------------------QVLSQ---- 456
            ..:::       ..:.:..|.:|::                               |:.||    
  Rat   302 RPNTHDFPLGRQLPTRTTPTLSPEELLNSRDCHPGLPLPPGFHPHPGPSYPPFLPDQMQSQVPSL 366

  Fly   457 -RSEKSANGSSKPHHPRQHHSDHS-PDAKRRIHKCQFLGCKKVYTKSSHLKAHQRTHTGEKPYKC 519
             ..|....||..|..|:......| |..:...|.|.:.||.|.||||||||||.|||||||||.|
  Rat   367 HYQELMPPGSCLPEEPKPKRGRRSWPRKRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHC 431

  Fly   520 SWEGCEWRFARSDELTRHYRKHTGAKPFKCRNCDRCFSRSDHLALHMKRH 569
            .|:||.|:||||||||||||||||.:||:|:.|||.||||||||||||||
  Rat   432 DWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lunaNP_001260879.1 COG5048 <455..>559 CDD:227381 62/109 (57%)
C2H2 Zn finger 489..511 CDD:275368 15/21 (71%)
zf-H2C2_2 503..>519 CDD:290200 14/15 (93%)
C2H2 Zn finger 519..541 CDD:275368 17/21 (81%)
zf-H2C2_2 533..558 CDD:290200 18/24 (75%)
C2H2 Zn finger 549..569 CDD:275368 16/19 (84%)
Klf4NP_446165.1 COG5048 <394..477 CDD:227381 59/82 (72%)
zf-C2H2 399..423 CDD:278523 16/23 (70%)
C2H2 Zn finger 401..423 CDD:275368 15/21 (71%)
C2H2 Zn finger 431..453 CDD:275368 17/21 (81%)
zf-H2C2_2 445..470 CDD:290200 18/24 (75%)
C2H2 Zn finger 461..481 CDD:275368 16/19 (84%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166344916
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 191 1.000 Inparanoid score I3785
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23235
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.990

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