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Protein Alignment Ir41a and Grid2

DIOPT Version :9

Sequence 1:	NP_995744.4	Gene:	Ir41a / 2768714	FlyBaseID:	FBgn0040849	Length:	648	Species:	Drosophila melanogaster
Sequence 2:	NP_077355.2	Gene:	Grid2 / 79220	RGDID:	68368	Length:	1007	Species:	Rattus norvegicus

Alignment Length:	507	Identity:	103/507 - (20%)
Similarity:	185/507 - (36%)	Gaps:	152/507 - (29%)

- Green bases have known domain annotations that are detailed below.

  Fly   199 SLFADKL-NNLQGREVIIAGFDYPPYTVIKHNMSTNAQDMGVSGESDFKNVYIDGTETRIVLNFC 262
            ||...|| ||::|..:.:......|:.::..|:        :.....::...||..:.  :.|:.
  Rat   428 SLTDKKLENNMRGVVLRVVTVLEEPFVMVSENV--------LGKPKKYQGFSIDVLDA--LSNYL 482

  Fly   263 EQFNCTIQIDSSAANDWGKVYPNMSGDGALGMLINRKADICIGAMYSWYE-----DYT--YLDLS 320
             .||..|.:  :..:.:|....:.:.:|.:|.|:.::|||.|.|:....:     |:|  |:|.|
  Rat   483 -GFNYEIYV--APDHKYGSPQEDGTWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYS 544

  Fly   321 MYLVRSGITCLVPAPLRLTSWYLPLEPFKETLWAAILLCLCAEATGLVLAYKSEQALYVL----- 380
            :     |:  |:....:....:..|.||..:|||      |...|.|::..    .:|:|
  Rat   545 V-----GV--LLRRAEKTVDMFACLAPFDLSLWA------CIAGTVLLVGL----LVYLLNWLNP 592

  Fly   381 PGYREGWWTCTSF--GVCTTFKLFISQSGNSKAYSLTVRVLLFACFLNDLIITSIYGGGLASILT 443
            |..:.|..|.|:.  .:...:..|:.|.|.....:|..|:::.|.:|..||:.|.|...||:.||
  Rat   593 PRLQMGSMTSTTLYNSMWFVYGSFVQQGGEVPYTTLATRMMMGAWWLFALIVISSYTANLAAFLT 657

  Fly   444 IPSMDEAADTVTRLRFHRLQWAANSEAWVSAIRA-SDEALVKDILYNFHIYSDDELLRLAQDQHM 507
            |          ||:.              |:|:: .|.:...||.|.       .:|..|..||:
  Rat   658 I----------TRIE--------------SSIQSLQDLSKQTDIPYG-------TVLDSAVYQHV 691

  Fly   508 RI-GFT-------------------------------VERLPFGHFAIGNYLGPQAIDQLVIMKD 540
            |: |..                               ::::.:|::|   ::...|:.:.|.:.|
  Rat   692 RMKGLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGNYA---FVWDAAVLEYVAIND 753

  Fly   541 DIYFQYTVAFVPRLWPLLDKLNTLIYSWHSSGFDKYWEYRVVADNLNLKIQQQVQETMTGTKDI- 604
            .....|||.            ||:....:.........||.|.....|::||      :|..||
  Rat   754 PDCSFYTVG------------NTVADRGYGIALQHGSPYRDVFSQRILELQQ------SGDMDIL 800

  Fly   605 --------GPV-------------PLGMSNFAGFIIVWILGSAIATLTFLLE 635
                    |..             .|.:.:.||...:...|..::.|..:||
  Rat   801 KHKWWPKNGQCDLYSSVDAKQKGGALDIKSLAGVFCILAAGIVLSCLIAVLE 852

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.